Variant report

Variant	rs78574421
Chromosome Location	chr16:81350276-81350277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81348969..81350661-chr16:81387216..81389989,2	MCF-7	breast:
2	chr16:81347539..81350872-chr16:81478035..81482618,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153815	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv532597	chr16:81009718-81388348	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
4	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
5	nsv1061359	chr16:81349826-81471867	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
6	nsv542992	chr16:81349826-81471867	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81347200-81350400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr16:81348200-81351800	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr16:81349400-81350400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
4	chr16:81349400-81350400	Flanking Active TSS	Dnd41	blood
5	chr16:81349600-81350400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr16:81349600-81350400	Enhancers	Spleen	Spleen
7	chr16:81349600-81351200	Enhancers	Small Intestine	intestine
8	chr16:81349600-81352000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr16:81349600-81352000	Weak transcription	Gastric	stomach
10	chr16:81349800-81350400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr16:81349800-81350400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr16:81349800-81350400	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr16:81349800-81350400	Enhancers	Fetal Muscle Leg	muscle
14	chr16:81349800-81350600	Enhancers	Primary T cells fromperipheralblood	blood
15	chr16:81349800-81350800	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr16:81349800-81352400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr16:81349800-81352400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr16:81349800-81352400	Weak transcription	Esophagus	oesophagus
19	chr16:81349800-81352400	Weak transcription	Left Ventricle	heart
20	chr16:81349800-81352400	Weak transcription	Psoas Muscle	Psoas
21	chr16:81349800-81357800	Weak transcription	Lung	lung
22	chr16:81349800-81358000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr16:81349800-81358400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr16:81349800-81358400	Weak transcription	Ovary	ovary
25	chr16:81349800-81365800	Weak transcription	Aorta	Aorta
26	chr16:81350000-81350400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr16:81350000-81350400	Active TSS	HUES48 Cell Line	embryonic stem cell
28	chr16:81350000-81350400	Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr16:81350000-81350400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
30	chr16:81350000-81350400	Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr16:81350000-81350400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr16:81350000-81350400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr16:81350000-81350400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr16:81350000-81350400	Enhancers	Muscle Satellite Cultured Cells	--
35	chr16:81350000-81350400	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr16:81350000-81350400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr16:81350000-81350400	Enhancers	Adipose Nuclei	Adipose
38	chr16:81350000-81350400	Enhancers	Liver	Liver
39	chr16:81350000-81350400	Active TSS	Brain Anterior Caudate	brain
40	chr16:81350000-81350400	Active TSS	Brain Hippocampus Middle	brain
41	chr16:81350000-81350400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr16:81350000-81350400	Enhancers	Duodenum Mucosa	Duodenum
43	chr16:81350000-81350400	Enhancers	Fetal Heart	heart
44	chr16:81350000-81350400	Enhancers	Fetal Kidney	kidney
45	chr16:81350000-81350400	Enhancers	Fetal Lung	lung
46	chr16:81350000-81350400	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr16:81350000-81350400	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr16:81350000-81350400	Enhancers	GM12878-XiMat	blood
49	chr16:81350000-81350400	Enhancers	Osteobl	bone
50	chr16:81350000-81350600	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links