Variant report

Variant	rs7858034
Chromosome Location	chr9:22080791-22080792
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:21828987..21830849-chr9:22080193..22082601,3	MCF-7	breast:
2	chr9:21825303..21827537-chr9:22080207..22082765,2	MCF-7	breast:
3	chr9:22079101..22081952-chr9:22082169..22083681,2	MCF-7	breast:
4	chr9:21830900..21838533-chr9:22079723..22086252,27	MCF-7	breast:
5	chr9:22080093..22089919-chr9:22099951..22109614,29	MCF-7	breast:
6	chr9:22071994..22076005-chr9:22076573..22081529,4	MCF-7	breast:
7	chr9:22079850..22083849-chr9:22087242..22090618,5	MCF-7	breast:
8	chr9:21836749..21837521-chr9:22080759..22081467,5	MCF-7	breast:
9	chr9:22080679..22082945-chr9:22134850..22136541,2	MCF-7	breast:
10	chr9:22078947..22090885-chr9:22096375..22111093,52	MCF-7	breast:
11	chr9:21831674..21838507-chr9:22079741..22086703,33	MCF-7	breast:

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17761446	1.00[AMR][1000 genomes]
rs3731220	1.00[AMR][1000 genomes]
rs72654261	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22073600-22084600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:22077400-22080800	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr9:22077800-22080800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr9:22078000-22080800	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr9:22078000-22080800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr9:22078200-22080800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr9:22078200-22080800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr9:22079000-22084600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr9:22079200-22080800	Enhancers	Primary T cells fromperipheralblood	blood
10	chr9:22079200-22080800	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr9:22079400-22080800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr9:22079600-22080800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:22079600-22080800	Enhancers	GM12878-XiMat	blood
14	chr9:22079600-22081000	Enhancers	Adipose Nuclei	Adipose
15	chr9:22079800-22080800	Enhancers	HMEC	breast
16	chr9:22079800-22081000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:22079800-22081200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:22080200-22080800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr9:22080200-22080800	Enhancers	Aorta	Aorta
20	chr9:22080200-22080800	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr9:22080400-22080800	Bivalent Enhancer	Primary T cells from cord blood	blood
22	chr9:22080400-22081000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr9:22080400-22083200	Weak transcription	NHEK	skin
24	chr9:22080400-22083800	Weak transcription	HSMMtube	muscle
25	chr9:22080400-22084000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr9:22080400-22084200	Weak transcription	NHDF-Ad	bronchial
27	chr9:22080400-22084400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr9:22080600-22080800	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr9:22080600-22080800	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr9:22080600-22080800	Enhancers	Osteobl	bone
31	chr9:22080600-22081000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr9:22080600-22083200	Weak transcription	Hela-S3	cervix
33	chr9:22080600-22083600	Weak transcription	NH-A	brain
34	chr9:22080600-22084000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr9:22080600-22084000	Weak transcription	NHLF	lung
36	chr9:22080600-22084400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr9:22080600-22089400	Weak transcription	Dnd41	blood
38	chr9:22080600-22098600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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