Variant report

Variant	rs7858909
Chromosome Location	chr9:8542391-8542392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10977190	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10977193	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6477315	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7856850	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv831504	chr9:8496277-8665773	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1026208	chr9:8534915-8595338	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv528345	chr9:8538919-8554938	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8420600-8557600	Weak transcription	Aorta	Aorta
2	chr9:8518400-8555200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:8533400-8552200	Weak transcription	Fetal Brain Male	brain
4	chr9:8534600-8564000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:8537000-8550200	Weak transcription	Fetal Brain Female	brain
6	chr9:8538000-8542400	Weak transcription	Brain Anterior Caudate	brain
7	chr9:8538000-8542600	Weak transcription	Brain Angular Gyrus	brain
8	chr9:8539000-8542600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:8541000-8543400	Enhancers	Brain Cingulate Gyrus	brain
10	chr9:8541400-8543400	Enhancers	Brain Substantia Nigra	brain
11	chr9:8541600-8542600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr9:8541600-8557600	Weak transcription	Fetal Stomach	stomach
13	chr9:8542000-8543000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr9:8542200-8543400	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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