Variant report

Variant	rs7859876
Chromosome Location	chr9:71923012-71923013
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10735537	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11791211	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1339544	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1572762	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1890634	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1931555	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3934321	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4237229	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4515616	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4744875	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6559453	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6559480	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7027671	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7033121	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7043840	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7044101	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7861213	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7868245	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051723	chr9:71398713-71971285	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv931684	chr9:71417110-71957723	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1049175	chr9:71418242-71986910	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv466396	chr9:71471912-71935577	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv614548	chr9:71471912-71935577	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv1035477	chr9:71511927-71959487	Enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	nsv831610	chr9:71846941-72016835	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71921600-71923400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:71922000-71923800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr9:71922200-71923400	Enhancers	Duodenum Smooth Muscle	Duodenum
4	chr9:71922200-71923400	Enhancers	Placenta Amnion	Placenta Amnion
5	chr9:71922200-71923600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr9:71922200-71923800	Enhancers	Fetal Muscle Leg	muscle
7	chr9:71922200-71923800	Enhancers	Stomach Smooth Muscle	stomach
8	chr9:71922400-71923200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr9:71922400-71923400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr9:71922400-71923800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr9:71922400-71923800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:71922400-71923800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:71922400-71923800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr9:71922400-71923800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr9:71922400-71923800	Enhancers	Fetal Stomach	stomach
16	chr9:71922400-71923800	Enhancers	NH-A	brain
17	chr9:71922400-71924400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:71922400-71924400	Enhancers	HSMMtube	muscle
19	chr9:71922400-71924600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:71922600-71923200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr9:71922600-71923400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr9:71922600-71923600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr9:71922600-71923600	Enhancers	Colon Smooth Muscle	Colon
24	chr9:71922800-71923200	Enhancers	Fetal Heart	heart
25	chr9:71922800-71923400	Enhancers	Osteobl	bone
26	chr9:71922800-71923600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr9:71922800-71924000	Weak transcription	Fetal Lung	lung
28	chr9:71923000-71923200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
29	chr9:71923000-71923200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr9:71923000-71923200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
31	chr9:71923000-71923200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
32	chr9:71923000-71923400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr9:71923000-71923400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr9:71923000-71923600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr9:71923000-71923600	Weak transcription	Fetal Kidney	kidney
36	chr9:71923000-71923600	Weak transcription	Placenta	Placenta
37	chr9:71923000-71924000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:71923000-71927600	Weak transcription	Aorta	Aorta

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