Variant report

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr9:116064960-116065851	HepG2	liver:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:116063629..116065379-chr9:116074653..116076801,2	K562	blood:
2	chr9:116063977..116066911-chr9:116102342..116104616,4	MCF-7	breast:
3	chr9:116037849..116040056-chr9:116062437..116065582,3	MCF-7	breast:
4	chr9:116036612..116039217-chr9:116063138..116067985,4	MCF-7	breast:
5	chr9:116063473..116067468-chr9:116171615..116174364,4	MCF-7	breast:
6	chr9:116063542..116066515-chr9:116162468..116165263,2	K562	blood:
7	chr9:116063284..116065510-chr9:116102338..116105750,4	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10981729	1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981730	1.00[ASN][1000 genomes]
rs10981735	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12378096	0.84[CEU][hapmap]
rs12380548	1.00[ASN][1000 genomes]
rs41276775	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66747389	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66790147	1.00[ASN][1000 genomes]
rs7026114	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7026831	1.00[ASN][1000 genomes]
rs7032611	1.00[ASN][1000 genomes]
rs7038589	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs818710	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1042663	chr9:115920158-116167140	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv893744	chr9:115934852-116170227	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7860315	SLC31A1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116054600-116065200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:116054800-116065200	Weak transcription	Esophagus	oesophagus
3	chr9:116055200-116085200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:116056000-116087000	Weak transcription	Thymus	Thymus
5	chr9:116056600-116065400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:116056800-116065200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:116061400-116065200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:116062400-116065200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr9:116062600-116075600	Weak transcription	Placenta	Placenta
10	chr9:116063200-116065200	Weak transcription	Gastric	stomach
11	chr9:116064400-116065200	Enhancers	Fetal Intestine Small	intestine
12	chr9:116064600-116065200	Enhancers	Duodenum Mucosa	Duodenum
13	chr9:116064600-116066000	Enhancers	Stomach Mucosa	stomach
14	chr9:116064600-116066000	Enhancers	K562	blood
15	chr9:116065000-116065200	Active TSS	Colonic Mucosa	Colon
16	chr9:116065000-116065200	Active TSS	Fetal Kidney	kidney
17	chr9:116065000-116065400	Flanking Active TSS	Fetal Intestine Large	intestine
18	chr9:116065000-116065600	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr9:116065000-116065800	Bivalent/Poised TSS	Fetal Stomach	stomach
20	chr9:116065000-116066000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
21	chr9:116065000-116066000	Flanking Active TSS	HepG2	liver

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