Variant report

Variant	rs786050
Chromosome Location	chr18:14878191-14878192
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11660702	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12457328	0.81[AMR][1000 genomes]
rs1713892	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1713893	0.85[AMR][1000 genomes]
rs1713895	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1770756	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3975142	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61670085	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66720816	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs786051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs786052	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916419	chr18:14418522-15165372	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	esv2751771	chr18:14704694-15106727	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv909434	chr18:14841828-15149366	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1800883	chr18:14867414-14886000	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv9620	chr18:14868404-14896940	Enhancers Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:14877000-14879200	Weak transcription	Osteobl	bone
2	chr18:14877800-14878400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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