Variant report

Variant	rs7861889
Chromosome Location	chr9:8285121-8285122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10114700	0.85[AMR][1000 genomes]
rs10120619	0.85[AMR][1000 genomes]
rs10121290	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10123620	1.00[AMR][1000 genomes]
rs12335702	1.00[AMR][1000 genomes]
rs12337625	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12342798	1.00[ASN][1000 genomes]
rs12343846	1.00[ASN][1000 genomes]
rs2211593	1.00[ASN][1000 genomes]
rs28737308	1.00[AMR][1000 genomes]
rs56407701	1.00[ASN][1000 genomes]
rs60581221	1.00[ASN][1000 genomes]
rs7043316	1.00[AMR][1000 genomes]
rs73416639	1.00[ASN][1000 genomes]
rs73418716	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1016723	chr9:8223541-8303017	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv892223	chr9:8258921-8318948	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	miRNA target site	n/a	inside rSNPs	diseases
5	nsv892224	chr9:8263737-8338431	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	miRNA target site	n/a	inside rSNPs	diseases
6	esv3481878	chr9:8280765-8286383	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv3481879	chr9:8280808-8286337	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3481880	chr9:8280808-8286337	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv2762787	chr9:8282283-8310704	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8282000-8286200	Weak transcription	Fetal Intestine Small	intestine
2	chr9:8282200-8286200	Weak transcription	Fetal Intestine Large	intestine
3	chr9:8284400-8286200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:8285000-8285400	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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