Variant report
| Variant | rs786255 |
|---|---|
| Chromosome Location | chr2:145691716-145691717 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs17407414 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17407477 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1968526 | 0.82[EUR][1000 genomes] |
| rs1968527 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2579022 | 0.81[EUR][1000 genomes] |
| rs2579023 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2918596 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6430071 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs706627 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs786218 | 0.81[EUR][1000 genomes] |
| rs786223 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs786224 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs786226 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs786227 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs786228 | 0.80[EUR][1000 genomes] |
| rs786229 | 0.82[EUR][1000 genomes] |
| rs786248 | 0.80[EUR][1000 genomes] |
| rs786252 | 0.82[EUR][1000 genomes] |
| rs786253 | 0.82[EUR][1000 genomes] |
| rs786256 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs786273 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs786274 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs796797 | 0.87[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs812530 | 0.81[EUR][1000 genomes] |
| rs9646680 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1002563 | chr2:145182201-145863253 | Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv535957 | chr2:145182201-145863253 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv932113 | chr2:145515124-145844491 | Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv834398 | chr2:145659419-145830156 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:145668800-145695600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr2:145690000-145692800 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
