Variant report

Variant	rs7862615
Chromosome Location	chr9:92688596-92688597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92687092..92689404-chr9:92701251..92704588,3	MCF-7	breast:
2	chr9:92687750..92690637-chr9:92691262..92693318,3	MCF-7	breast:
3	chr9:92217841..92222641-chr9:92679830..92688712,19	MCF-7	breast:
4	chr9:92686545..92689268-chr9:92692416..92694064,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4744120	0.96[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs66590316	0.95[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs72752986	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7862786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15329	chr9:92678855-92698160	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92681600-92691600	Weak transcription	Right Atrium	heart
2	chr9:92681800-92689000	Weak transcription	Right Ventricle	heart
3	chr9:92682000-92689200	Weak transcription	Lung	lung
4	chr9:92683800-92689200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:92685000-92690800	Enhancers	Liver	Liver
6	chr9:92685000-92691200	Weak transcription	Spleen	Spleen
7	chr9:92685200-92689200	Weak transcription	Gastric	stomach
8	chr9:92685400-92688600	Weak transcription	Fetal Brain Male	brain
9	chr9:92686200-92689800	Enhancers	Pancreas	Pancrea
10	chr9:92686400-92689600	Weak transcription	Fetal Kidney	kidney
11	chr9:92686600-92688800	Weak transcription	Fetal Heart	heart
12	chr9:92686600-92689200	Weak transcription	Fetal Lung	lung
13	chr9:92686600-92689200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr9:92686600-92691000	Weak transcription	Fetal Thymus	thymus
15	chr9:92686600-92691200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr9:92686600-92691400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:92686800-92688600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr9:92686800-92689000	Weak transcription	Ovary	ovary
19	chr9:92686800-92689200	Weak transcription	Fetal Intestine Small	intestine
20	chr9:92687000-92689200	Weak transcription	Fetal Intestine Large	intestine
21	chr9:92687000-92691400	Weak transcription	Placenta	Placenta
22	chr9:92687400-92689200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr9:92687400-92689200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr9:92687800-92689400	Weak transcription	Brain Angular Gyrus	brain
25	chr9:92688000-92690600	Weak transcription	Psoas Muscle	Psoas
26	chr9:92688400-92689000	Enhancers	Stomach Smooth Muscle	stomach
27	chr9:92688400-92689000	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links