Variant report

Variant	rs7862890
Chromosome Location	chr9:14125188-14125189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10756530	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10810093	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35870361	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs497789	0.84[EUR][1000 genomes]
rs508940	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs510777	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs516075	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs516090	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs574460	0.84[ASN][1000 genomes]
rs580501	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7019649	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7034211	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv429998	chr9:14043516-14214688	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14097400-14135400	Weak transcription	HSMMtube	muscle
2	chr9:14101800-14128200	Weak transcription	Esophagus	oesophagus
3	chr9:14103400-14128400	Weak transcription	Brain Angular Gyrus	brain
4	chr9:14107000-14126400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:14108000-14127400	Weak transcription	Stomach Mucosa	stomach
6	chr9:14108800-14143800	Weak transcription	Fetal Intestine Small	intestine
7	chr9:14110000-14128400	Weak transcription	Fetal Kidney	kidney
8	chr9:14110200-14127200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr9:14114400-14125200	Weak transcription	Colonic Mucosa	Colon
10	chr9:14115400-14127000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:14116200-14127000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:14116400-14137800	Weak transcription	Small Intestine	intestine
13	chr9:14116600-14128000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:14116600-14133400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr9:14116600-14159200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr9:14116600-14179200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr9:14116800-14125200	Weak transcription	Left Ventricle	heart
18	chr9:14116800-14125600	Weak transcription	Ovary	ovary
19	chr9:14116800-14128600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr9:14116800-14156000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:14117000-14171200	Weak transcription	Hela-S3	cervix
22	chr9:14117400-14130400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr9:14118400-14126200	Weak transcription	HSMM	muscle
24	chr9:14118400-14127600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr9:14120200-14159000	Weak transcription	NHLF	lung
26	chr9:14120400-14130200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr9:14120600-14125400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr9:14120600-14125600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr9:14120600-14126400	Weak transcription	Fetal Brain Male	brain
30	chr9:14120600-14127000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:14120600-14127600	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr9:14120600-14128400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr9:14120600-14130400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr9:14120600-14131400	Weak transcription	Pancreas	Pancrea
35	chr9:14120600-14132600	Weak transcription	Psoas Muscle	Psoas
36	chr9:14120600-14133600	Weak transcription	Right Ventricle	heart
37	chr9:14120600-14151600	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr9:14120600-14154800	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr9:14120600-14159000	Weak transcription	NH-A	brain
40	chr9:14120800-14125200	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr9:14120800-14125400	Weak transcription	Liver	Liver
42	chr9:14120800-14125600	Weak transcription	Osteobl	bone
43	chr9:14120800-14135400	Weak transcription	NHEK	skin
44	chr9:14121000-14125200	Weak transcription	Placenta	Placenta
45	chr9:14121000-14126000	Weak transcription	Fetal Heart	heart
46	chr9:14121200-14125400	Weak transcription	Adipose Nuclei	Adipose
47	chr9:14121200-14127000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr9:14121600-14129000	Weak transcription	Brain Hippocampus Middle	brain
49	chr9:14121600-14143600	Weak transcription	Brain Substantia Nigra	brain
50	chr9:14122000-14127600	Strong transcription	HUVEC	blood vessel

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