Variant report

Variant	rs7863183
Chromosome Location	chr9:117642418-117642419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2418322	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2418323	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4979466	0.89[EUR][1000 genomes]
rs4979467	0.89[EUR][1000 genomes]
rs7043505	0.89[EUR][1000 genomes]
rs7043766	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7043832	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7043898	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893767	chr9:117627569-117689838	Bivalent Enhancer Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7863183	TIGD5	trans	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117633000-117647400	Weak transcription	Stomach Mucosa	stomach
2	chr9:117638600-117643000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr9:117642200-117643200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr9:117642200-117643800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:117642200-117644000	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr9:117642400-117643000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:117642400-117643400	Enhancers	HUVEC	blood vessel
8	chr9:117642400-117649000	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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