Variant report

Variant	rs7863910
Chromosome Location	chr9:116065613-116065614
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:18)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:18 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:116065167-116065756	HepG2	liver:	n/a	n/a
2	POLR2A	chr9:116065099-116065684	HepG2	liver:	n/a	n/a
3	MYBL2	chr9:116065172-116065897	HepG2	liver:	n/a	n/a
4	MXI1	chr9:116065217-116065686	HepG2	liver:	n/a	n/a
5	HEY1	chr9:116065068-116065809	HepG2	liver:	n/a	n/a
6	FOSL2	chr9:116065169-116065740	HepG2	liver:	n/a	n/a
7	HNF4A	chr9:116065076-116065631	HepG2	liver:	n/a	chr9:116065237-116065252 chr9:116065281-116065296
8	FOXA1	chr9:116065130-116065772	HepG2	liver:	n/a	n/a
9	POLR2A	chr9:116065088-116065641	HepG2	liver:	n/a	n/a
10	RFX5	chr9:116065457-116065657	HepG2	liver:	n/a	n/a
11	MAX	chr9:116064960-116065851	HepG2	liver:	n/a	n/a
12	MBD4	chr9:116065262-116065744	HepG2	liver:	n/a	n/a
13	JUND	chr9:116065419-116065685	HepG2	liver:	n/a	chr9:116065561-116065572
14	FOXA1	chr9:116065207-116065684	HepG2	liver:	n/a	n/a
15	SP1	chr9:116065075-116065729	HepG2	liver:	n/a	n/a
16	FOXA1	chr9:116065190-116065695	HepG2	liver:	n/a	n/a
17	POLR2A	chr9:116065139-116065644	HepG2	liver:	n/a	n/a
18	POU2F2	chr9:116065203-116065658	GM12891	blood:	n/a	chr9:116065440-116065453

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:116065580..116067565-chr9:116101050..116102835,2	MCF-7	breast:
2	chr9:116063977..116066911-chr9:116102342..116104616,4	MCF-7	breast:
3	chr9:116036612..116039217-chr9:116063138..116067985,4	MCF-7	breast:
4	chr9:116063473..116067468-chr9:116171615..116174364,4	MCF-7	breast:
5	chr9:116063542..116066515-chr9:116162468..116165263,2	K562	blood:
6	chr9:116065546..116067131-chr9:116136857..116139618,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WDR31-2	chr9:116065336-116065656	NONHSAT134336

No data

Variant related genes	Relation type
RNF183	TF binding region
ENSG00000176386	Chromatin interaction
ENSG00000136875	Chromatin interaction
ENSG00000148225	Chromatin interaction
ENSG00000157653	Chromatin interaction
ENSG00000119431	Chromatin interaction
ENSG00000148229	Chromatin interaction
ENSG00000148218	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10481674	1.00[JPT][hapmap]
rs10759634	0.85[AMR][1000 genomes]
rs10817466	0.85[AMR][1000 genomes]
rs10817469	0.85[AMR][1000 genomes]
rs10817471	0.85[AMR][1000 genomes]
rs10817472	0.85[AMR][1000 genomes]
rs10981705	0.85[AMR][1000 genomes]
rs10981733	1.00[JPT][hapmap]
rs10981743	1.00[JPT][hapmap]
rs10981745	1.00[JPT][hapmap]
rs10981746	1.00[JPT][hapmap]
rs10981747	1.00[JPT][hapmap]
rs10981748	1.00[JPT][hapmap]
rs12006029	1.00[JPT][hapmap]
rs12336832	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12337552	1.00[JPT][hapmap]
rs12341669	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12342197	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12342549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12343330	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12348629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12349495	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12349500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12349614	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12351168	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12351630	1.00[ASN][1000 genomes]
rs12352784	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12352925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1543535	1.00[JPT][hapmap]
rs16932583	1.00[JPT][hapmap]
rs16932649	1.00[CHB][hapmap]
rs17764563	1.00[JPT][hapmap];0.88[YRI][hapmap]
rs17831256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28733164	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4437724	1.00[JPT][hapmap]
rs4442214	1.00[JPT][hapmap]
rs4636275	1.00[JPT][hapmap]
rs5012573	1.00[CHB][hapmap]
rs58402825	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66509679	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7858741	0.85[AMR][1000 genomes]
rs7865438	1.00[JPT][hapmap]
rs7875945	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1042663	chr9:115920158-116167140	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv893744	chr9:115934852-116170227	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116055200-116085200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr9:116056000-116087000	Weak transcription	Thymus	Thymus
3	chr9:116062600-116075600	Weak transcription	Placenta	Placenta
4	chr9:116064600-116066000	Enhancers	Stomach Mucosa	stomach
5	chr9:116064600-116066000	Enhancers	K562	blood
6	chr9:116065000-116065800	Bivalent/Poised TSS	Fetal Stomach	stomach
7	chr9:116065000-116066000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr9:116065000-116066000	Flanking Active TSS	HepG2	liver
9	chr9:116065200-116065800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:116065200-116066000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:116065200-116066000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:116065400-116086800	Weak transcription	Gastric	stomach
13	chr9:116065600-116065800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:116065600-116065800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr9:116065600-116065800	Flanking Active TSS	Fetal Kidney	kidney
16	chr9:116065600-116079000	Weak transcription	Fetal Intestine Small	intestine
17	chr9:116065600-116083400	Weak transcription	Esophagus	oesophagus

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