Variant report

Variant	rs7864140
Chromosome Location	chr9:94556191-94556192
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12683746	0.93[YRI][hapmap]
rs16907798	0.94[YRI][hapmap]
rs4743852	0.87[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap]
rs4743854	0.94[YRI][hapmap]
rs4744101	0.87[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap]
rs4744103	0.88[YRI][hapmap]
rs59684520	1.00[EUR][1000 genomes]
rs61577198	1.00[EUR][1000 genomes]
rs73513257	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73515166	1.00[EUR][1000 genomes]
rs73515174	1.00[EUR][1000 genomes]
rs73515182	1.00[EUR][1000 genomes]
rs7855609	1.00[YRI][hapmap]
rs7872107	1.00[YRI][hapmap]
rs7872492	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
7	nsv523940	chr9:94546564-94573753	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94548200-94557800	Weak transcription	Fetal Lung	lung
2	chr9:94549200-94557800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr9:94549400-94558000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:94550600-94557800	Weak transcription	Colon Smooth Muscle	Colon
5	chr9:94551400-94558000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:94553200-94558000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:94553200-94561200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:94553600-94558000	Weak transcription	NHEK	skin
9	chr9:94553600-94558400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:94553800-94558200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:94554000-94558000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:94554200-94557800	Weak transcription	K562	blood
13	chr9:94554200-94558000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:94555400-94562000	Weak transcription	Right Atrium	heart
15	chr9:94555800-94556400	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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