Variant report

Variant	rs7864171
Chromosome Location	chr9:97723266-97723267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97682261..97685943-chr9:97720452..97723608,3	MCF-7	breast:
2	chr9:97716548..97719143-chr9:97721802..97724733,2	K562	blood:
3	chr9:97722921..97724828-chr9:97727908..97729836,2	K562	blood:
4	chr9:97688635..97691116-chr9:97722109..97725030,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10993377	0.82[EUR][1000 genomes]
rs10993394	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10993397	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10993398	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10993418	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1123534	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11787821	0.87[EUR][1000 genomes]
rs12235316	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2183958	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4385527	0.86[EUR][1000 genomes]
rs4744403	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4744411	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7853195	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7865239	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1045849	chr9:97688810-97741336	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97670600-97766000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:97709200-97730400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr9:97713400-97726200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:97713800-97757400	Weak transcription	Fetal Brain Female	brain
5	chr9:97714200-97734200	Weak transcription	Lung	lung
6	chr9:97714200-97735800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:97715000-97735600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr9:97715000-97758200	Weak transcription	Spleen	Spleen
9	chr9:97715200-97732200	Weak transcription	Ovary	ovary
10	chr9:97715200-97734600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr9:97715200-97748200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:97715400-97723400	Weak transcription	Esophagus	oesophagus
13	chr9:97715400-97735800	Weak transcription	Right Ventricle	heart
14	chr9:97715400-97741200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr9:97715400-97749600	Weak transcription	Thymus	Thymus
16	chr9:97715600-97724200	Weak transcription	NHLF	lung
17	chr9:97715600-97730000	Weak transcription	Hela-S3	cervix
18	chr9:97715600-97742000	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr9:97715600-97742000	Weak transcription	Psoas Muscle	Psoas
20	chr9:97715600-97742400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr9:97715800-97724000	Weak transcription	Brain Substantia Nigra	brain
22	chr9:97715800-97735600	Weak transcription	NHDF-Ad	bronchial
23	chr9:97716000-97724000	Weak transcription	Brain Angular Gyrus	brain
24	chr9:97716000-97724000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr9:97716000-97729400	Weak transcription	Fetal Kidney	kidney
26	chr9:97716000-97735200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr9:97716000-97742400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr9:97716200-97724200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr9:97716200-97734000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr9:97716200-97734000	Weak transcription	Left Ventricle	heart
31	chr9:97716200-97735200	Weak transcription	NH-A	brain
32	chr9:97716200-97735400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr9:97716600-97734200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr9:97716600-97735800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr9:97716800-97732400	Weak transcription	Fetal Heart	heart
36	chr9:97718200-97724000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr9:97718400-97724000	Weak transcription	Fetal Lung	lung
38	chr9:97718800-97736800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr9:97718800-97744000	Weak transcription	GM12878-XiMat	blood
40	chr9:97719000-97723600	Weak transcription	Brain Cingulate Gyrus	brain
41	chr9:97719000-97723600	Weak transcription	Brain Hippocampus Middle	brain
42	chr9:97719000-97724000	Weak transcription	Brain Anterior Caudate	brain
43	chr9:97719000-97730000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr9:97719000-97733400	Weak transcription	Primary B cells from cord blood	blood
45	chr9:97719000-97733800	Weak transcription	Aorta	Aorta
46	chr9:97719000-97734000	Weak transcription	Fetal Muscle Trunk	muscle
47	chr9:97719000-97735600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr9:97719000-97735800	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr9:97719000-97743400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr9:97719000-97745800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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