Variant report

Variant	rs7864745
Chromosome Location	chr9:16875622-16875623
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:16875612-16875662	HEK293	kidney:	embryo
2	chr9:16875612-16875662	Hela-S3	cervix:	n/a
3	chr9:16875612-16875662	HRE	kidney:	n/a
4	chr9:16875612-16875662	MCF10A-Er-Src	breast:	n/a
5	chr9:16875612-16875662	NT2-D1	testis:	n/a
6	chr9:16875612-16875662	PFSK-1	brain:	n/a
7	chr9:16875612-16875662	AG04449	skin:	fetal
8	chr9:16875612-16875662	HCF	heart:	n/a
9	chr9:16875612-16875662	HMEC	breast:	n/a
10	chr9:16875612-16875662	GM19239	blood:	n/a
11	chr9:16875612-16875662	Caco-2	colon:	n/a
12	chr9:16875612-16875662	GM06990	blood:	n/a
13	chr9:16875612-16875662	NHBE	bronchial:	n/a
14	chr9:16875612-16875662	RPTEC	kidney:	n/a
15	chr9:16875612-16875662	HEEpiC	esophagus:	n/a
16	chr9:16875612-16875662	GM12878	blood:	n/a
17	chr9:16875612-16875662	SK-N-SH_RA	brain:	n/a
18	chr9:16875612-16875662	CMK	blood:	n/a
19	chr9:16875612-16875662	AoSMC	blood vessel:	n/a
20	chr9:16875612-16875662	BE2_C	brain:	n/a
21	chr9:16875612-16875662	H1-hESC	embryonic stem cell:	embryo
22	chr9:16875612-16875662	Hepatocyte	liver:	n/a
23	chr9:16875612-16875662	AG04450	lung:	fetal
24	chr9:16875612-16875662	HIPEpiC	eye:	n/a
25	chr9:16875612-16875662	SK-N-MC	brain:	n/a
26	chr9:16875612-16875662	AG10803	skin:	n/a
27	chr9:16875612-16875662	NH-A	brain:	n/a
28	chr9:16875612-16875662	GM12891	blood:	n/a
29	chr9:16875612-16875662	HCT-116	colon:	n/a
30	chr9:16875612-16875662	HL-60	blood:	n/a
31	chr9:16875612-16875662	NB4	blood:	n/a
32	chr9:16875612-16875662	HUVEC	blood vessel:	n/a
33	chr9:16875612-16875662	GM12892	blood:	n/a
34	chr9:16875612-16875662	HCM	heart:	n/a
35	chr9:16875612-16875662	SK-N-SH	brain:	n/a
36	chr9:16875612-16875662	T-47D	breast:	n/a
37	chr9:16875612-16875662	BJ	skin:	n/a
38	chr9:16875612-16875662	HRCEpiC	kidney:	n/a
39	chr9:16875612-16875662	PrEC	prostate:	n/a
40	chr9:16875612-16875662	HAEpiC	amniotic membrane:	n/a
41	chr9:16875612-16875662	HNPCEpiC	eye:	n/a
42	chr9:16875612-16875662	MCF-7	breast:	n/a
43	chr9:16875612-16875662	A549	lung:	n/a
44	chr9:16875612-16875662	U87	brain:	n/a
45	chr9:16875612-16875662	HRPEpiC	eye:	n/a
46	chr9:16875612-16875662	HPAEpiC	pulmonary alveolar:	n/a
47	chr9:16875612-16875662	IMR90	lung:	fetal
48	chr9:16875612-16875662	SKMC	muscle:	n/a
49	chr9:16875612-16875662	ovcar-3	ovarian:	n/a
50	chr9:16875612-16875662	ECC-1	luminal epithelium:	n/a

No data

Variant related genes	Relation type
BNC2	CpG island

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10756825	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13290171	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34358697	0.94[AMR][1000 genomes]
rs34919930	0.96[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs35386000	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35483590	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs36021466	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7021921	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7027849	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7044899	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71513271	0.94[AMR][1000 genomes]
rs71513274	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71513275	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71513276	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7864210	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7868212	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7868424	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892652	chr9:16843128-16958312	Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv892653	chr9:16848790-16895610	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv1018615	chr9:16865804-16960970	Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	nsv540074	chr9:16865804-16960970	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16872000-16885000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:16872200-16879400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:16874000-16883400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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