Variant report

Variant	rs7864977
Chromosome Location	chr9:8553984-8553985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10120877	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10217270	1.00[EUR][1000 genomes]
rs7027214	1.00[EUR][1000 genomes]
rs72694788	1.00[EUR][1000 genomes]
rs72696647	1.00[EUR][1000 genomes]
rs72696652	1.00[EUR][1000 genomes]
rs72696654	1.00[EUR][1000 genomes]
rs7870438	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv831504	chr9:8496277-8665773	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1026208	chr9:8534915-8595338	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv528345	chr9:8538919-8554938	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	nsv972602	chr9:8551974-8554250	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8420600-8557600	Weak transcription	Aorta	Aorta
2	chr9:8518400-8555200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:8534600-8564000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr9:8541600-8557600	Weak transcription	Fetal Stomach	stomach
5	chr9:8545600-8555800	Weak transcription	Fetal Lung	lung
6	chr9:8546000-8557000	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:8552000-8554000	Enhancers	Brain Hippocampus Middle	brain
8	chr9:8553000-8561400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:8553400-8555400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr9:8553600-8571000	Weak transcription	Brain Anterior Caudate	brain
11	chr9:8553800-8555800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr9:8553800-8555800	Weak transcription	Brain Substantia Nigra	brain
13	chr9:8553800-8559400	Weak transcription	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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