Variant report

Variant	rs7865428
Chromosome Location	chr9:21566730-21566731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4977728	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
2	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
3	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7865428	IFNA2	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21560800-21567400	Weak transcription	NHDF-Ad	bronchial
2	chr9:21563800-21567000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:21563800-21567200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:21564000-21567200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:21564200-21567000	Enhancers	Osteobl	bone
6	chr9:21564400-21567600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:21564600-21570400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:21564800-21568000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr9:21565200-21567600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:21565200-21568600	Flanking Active TSS	A549	lung
11	chr9:21565600-21576000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr9:21565800-21567800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr9:21565800-21568200	Enhancers	NHEK	skin
14	chr9:21565800-21570400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:21565800-21570400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr9:21566000-21567400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:21566400-21570200	Weak transcription	Hela-S3	cervix
18	chr9:21566400-21570200	Weak transcription	HMEC	breast
19	chr9:21566600-21570600	Weak transcription	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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