Variant report
Variant | rs7865785 |
---|---|
Chromosome Location | chr9:101427796-101427797 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr9:101421484..101423880-chr9:101427519..101430090,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10125034 | 0.85[YRI][hapmap];0.83[AFR][1000 genomes] |
rs10739676 | 0.83[YRI][hapmap];0.81[AFR][1000 genomes] |
rs10739678 | 0.83[AFR][1000 genomes] |
rs10760441 | 0.83[AFR][1000 genomes] |
rs10986850 | 1.00[CHB][hapmap] |
rs10986995 | 1.00[CHB][hapmap] |
rs10986999 | 1.00[CHB][hapmap] |
rs10987005 | 1.00[CHB][hapmap] |
rs12341571 | 1.00[CHB][hapmap] |
rs12377101 | 1.00[CHB][hapmap] |
rs12378806 | 1.00[CHB][hapmap] |
rs1571929 | 0.85[YRI][hapmap];0.80[AFR][1000 genomes] |
rs1571930 | 0.84[YRI][hapmap];0.80[AFR][1000 genomes] |
rs1930134 | 0.85[YRI][hapmap];0.80[AFR][1000 genomes] |
rs1930136 | 0.85[YRI][hapmap] |
rs2900547 | 0.84[YRI][hapmap];0.80[AFR][1000 genomes] |
rs4477137 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4606175 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs4743254 | 0.84[YRI][hapmap];0.80[AFR][1000 genomes] |
rs58711145 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7019449 | 1.00[CEU][hapmap] |
rs72760668 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs72760671 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs72760677 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72760678 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs72760679 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs72760681 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs72760683 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs72760684 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs72760685 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs72760700 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72760701 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs7853807 | 0.85[YRI][hapmap];0.83[AFR][1000 genomes] |
rs7853820 | 0.85[YRI][hapmap];0.83[AFR][1000 genomes] |
rs7868757 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7869915 | 0.85[YRI][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv614936 | chr9:101182698-101680380 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
2 | nsv893614 | chr9:101340316-101671634 | Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
3 | nsv893615 | chr9:101356515-101678036 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
4 | nsv893616 | chr9:101371017-101472921 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:101422200-101429600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
2 | chr9:101424000-101432200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
3 | chr9:101425000-101429400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
4 | chr9:101427600-101428200 | Bivalent Enhancer | Cortex derived primary cultured neurospheres | brain |