Variant report

Variant	rs7866350
Chromosome Location	chr9:100983826-100983827
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100983664..100985681-chr9:101009334..101011944,2	MCF-7	breast:
2	chr9:100967414..100970312-chr9:100980747..100984136,3	K562	blood:
3	chr9:100940296..100942247-chr9:100983555..100986417,2	MCF-7	breast:
4	chr9:100834907..100836936-chr9:100979916..100984357,4	MCF-7	breast:
5	chr9:100978143..100990074-chr9:101014745..101021064,26	MCF-7	breast:
6	chr9:100983381..100985865-chr9:101008281..101010298,2	K562	blood:
7	chr9:100978379..100981357-chr9:100982432..100984445,2	K562	blood:

Variant related genes	Relation type
ENSG00000095383	Chromatin interaction
ENSG00000095380	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1074003	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10760206	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10818581	0.80[CEU][hapmap]
rs10818590	0.85[CEU][hapmap]
rs10818609	0.88[ASN][1000 genomes]
rs10985385	0.81[CEU][hapmap]
rs10985408	0.89[ASN][1000 genomes]
rs10985454	0.93[CEU][hapmap];0.88[CHB][hapmap];0.88[ASN][1000 genomes]
rs10985500	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10985507	0.91[GIH][hapmap]
rs2282433	0.88[ASN][1000 genomes]
rs3780447	0.93[CEU][hapmap];0.88[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];0.88[ASN][1000 genomes]
rs4408014	0.93[CEU][hapmap];0.85[CHB][hapmap];0.80[JPT][hapmap];0.87[ASN][1000 genomes]
rs62574275	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6478608	0.80[ASN][1000 genomes]
rs7035365	0.80[CEU][hapmap]
rs72757981	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053729	chr9:100909554-100997718	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100955800-101003200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:100958600-100985400	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr9:100959600-100984400	Strong transcription	Osteobl	bone
4	chr9:100959800-100985200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr9:100961400-101001400	Weak transcription	Right Atrium	heart
6	chr9:100968000-100987000	Weak transcription	Small Intestine	intestine
7	chr9:100968400-100995600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr9:100968400-100997600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr9:100968600-100985400	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr9:100968600-101010400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr9:100968800-100984600	Weak transcription	K562	blood
12	chr9:100968800-100998000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:100968800-101011000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr9:100969000-100984800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:100969200-100985600	Strong transcription	Fetal Intestine Small	intestine
16	chr9:100969400-101004800	Weak transcription	Brain Germinal Matrix	brain
17	chr9:100969600-100997200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr9:100969800-100991800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr9:100970000-100985400	Strong transcription	Spleen	Spleen
20	chr9:100970200-101001600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr9:100971200-100985200	Strong transcription	Lung	lung
22	chr9:100971400-100985400	Strong transcription	Fetal Intestine Large	intestine
23	chr9:100973000-100985800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr9:100973800-100985400	Weak transcription	Stomach Mucosa	stomach
25	chr9:100974000-100984800	Strong transcription	Esophagus	oesophagus
26	chr9:100974800-100985200	Strong transcription	Sigmoid Colon	Sigmoid Colon
27	chr9:100974800-101010600	Weak transcription	Colon Smooth Muscle	Colon
28	chr9:100976400-100984400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:100976400-100984400	Weak transcription	NHDF-Ad	bronchial
30	chr9:100976400-100998800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:100978200-100984200	Strong transcription	Muscle Satellite Cultured Cells	--
32	chr9:100978200-100985200	Weak transcription	HepG2	liver
33	chr9:100978400-100984200	Strong transcription	HMEC	breast
34	chr9:100978600-100984400	Strong transcription	NHEK	skin
35	chr9:100978800-100984800	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr9:100978800-100986200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr9:100980000-100985400	Weak transcription	Fetal Muscle Leg	muscle
38	chr9:100980200-101010200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr9:100980800-100986000	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr9:100981000-100985000	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr9:100981000-100985400	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr9:100981200-100984000	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr9:100981200-100984000	Strong transcription	Stomach Smooth Muscle	stomach
44	chr9:100981400-100984400	Strong transcription	Hela-S3	cervix
45	chr9:100981400-100984600	Strong transcription	Brain Substantia Nigra	brain
46	chr9:100981600-100984000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr9:100981600-100985600	Strong transcription	Primary T cells from cord blood	blood
48	chr9:100981600-100987600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr9:100981800-100984400	Strong transcription	NHLF	lung
50	chr9:100981800-101010400	Weak transcription	Fetal Thymus	thymus

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