Variant report

Variant	rs7866760
Chromosome Location	chr9:107950174-107950175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr9:107950086-107950486	HepG2	liver:	n/a	n/a
2	FOS	chr9:107950054-107950435	MCF10A-Er-Src	breast:	n/a	chr9:107950250-107950261 chr9:107950237-107950248
3	EP300	chr9:107949874-107950620	A549	lung:	n/a	n/a
4	FOSL2	chr9:107949823-107950585	A549	lung:	n/a	n/a
5	TCF12	chr9:107950003-107950551	SK-N-SH	brain:	n/a	n/a
6	GABPA	chr9:107950044-107950387	MCF-7	breast:	n/a	n/a
7	JUND	chr9:107950055-107950320	A549	lung:	n/a	chr9:107950250-107950261
8	FOXA1	chr9:107950015-107950433	HepG2	liver:	n/a	n/a
9	JUND	chr9:107949911-107950504	SK-N-SH	brain:	n/a	chr9:107950250-107950261
10	FOXA2	chr9:107950086-107950857	A549	lung:	n/a	n/a
11	FOS	chr9:107950047-107950466	HUVEC	blood vessel:	n/a	chr9:107950250-107950261 chr9:107950237-107950248
12	MAX	chr9:107949881-107950541	A549	lung:	n/a	n/a
13	USF1	chr9:107950036-107950425	A549	lung:	n/a	n/a
14	MYC	chr9:107950108-107950392	MCF10A-Er-Src	breast:	n/a	n/a
15	POLR2A	chr9:107950054-107950449	SK-N-SH	brain:	n/a	n/a
16	MAX	chr9:107949987-107950530	A549	lung:	n/a	n/a
17	REST	chr9:107949893-107950518	A549	lung:	n/a	n/a
18	JUN	chr9:107950076-107950418	Hela-S3	cervix:	n/a	n/a
19	RAD21	chr9:107949974-107950472	A549	lung:	n/a	n/a
20	FOS	chr9:107950044-107950445	MCF10A-Er-Src	breast:	n/a	chr9:107950250-107950261 chr9:107950237-107950248
21	NFIC	chr9:107950004-107950530	SK-N-SH	brain:	n/a	n/a
22	FOXA1	chr9:107950003-107950440	HepG2	liver:	n/a	n/a
23	TCF12	chr9:107950050-107950476	A549	lung:	n/a	n/a
24	GABPA	chr9:107950055-107950379	A549	lung:	n/a	n/a
25	STAT3	chr9:107950121-107950323	MCF10A-Er-Src	breast:	n/a	n/a
26	FOSL2	chr9:107949982-107950473	SK-N-SH	brain:	n/a	n/a
27	JUND	chr9:107949945-107950476	SK-N-SH	brain:	n/a	chr9:107950250-107950261
28	FOSL1	chr9:107949964-107950393	HCT-116	colon:	n/a	n/a
29	RAD21	chr9:107950101-107950469	A549	lung:	n/a	n/a
30	FOXA2	chr9:107950072-107950324	HepG2	liver:	n/a	n/a
31	CEBPB	chr9:107950001-107950526	A549	lung:	n/a	n/a
32	PBX3	chr9:107949983-107950476	SK-N-SH	brain:	n/a	n/a
33	CEBPB	chr9:107949972-107950541	MCF-7	breast:	n/a	n/a
34	STAT3	chr9:107950142-107950399	MCF10A-Er-Src	breast:	n/a	n/a
35	MYC	chr9:107950078-107950342	MCF10A-Er-Src	breast:	n/a	n/a
36	BCL3	chr9:107949887-107950563	A549	lung:	n/a	n/a
37	GATA3	chr9:107950084-107950485	MCF-7	breast:	n/a	n/a
38	TEAD4	chr9:107949921-107950511	A549	lung:	n/a	n/a
39	TEAD4	chr9:107949956-107950400	SK-N-SH	brain:	n/a	n/a
40	JUND	chr9:107950074-107950446	Hela-S3	cervix:	n/a	chr9:107950250-107950261
41	NR3C1	chr9:107950058-107950453	A549	lung:	n/a	n/a
42	SP1	chr9:107949855-107950558	A549	lung:	n/a	n/a
43	CEBPB	chr9:107950067-107950506	MCF-7	breast:	n/a	n/a
44	JUND	chr9:107950082-107950347	HepG2	liver:	n/a	chr9:107950250-107950261
45	GABPA	chr9:107949991-107950437	A549	lung:	n/a	n/a
46	CEBPB	chr9:107950071-107950470	Hela-S3	cervix:	n/a	n/a
47	EP300	chr9:107950055-107950333	SK-N-SH_RA	brain:	n/a	n/a
48	NR3C1	chr9:107950037-107950427	A549	lung:	n/a	n/a
49	JUN	chr9:107950106-107950369	HepG2	liver:	n/a	n/a
50	ZBTB33	chr9:107950046-107950431	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:107949926..107956747-chr9:108004908..108009966,10	MCF-7	breast:
2	chr9:107948857..107951560-chr9:108005097..108008240,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238208	TF binding region
ENSG00000070214	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12001283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13288985	1.00[CHB][hapmap]
rs13299435	1.00[CHB][hapmap]
rs1960559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1960560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41339744	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55984082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56004406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56213771	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56220941	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56276643	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56314355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56913513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58186954	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58525889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59030684	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60750753	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61078849	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61496139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029837	1.00[CHB][hapmap]
rs7044574	1.00[CHB][hapmap]
rs72742529	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72742531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72742533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72742540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72742541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046935	chr9:107414720-108028061	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv893684	chr9:107893629-108001107	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv831678	chr9:107923522-108112813	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1045079	chr9:107938039-107975595	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv893685	chr9:107940737-108083485	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1043466	chr9:107950174-108001988	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:107949000-107951200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:107949400-107950800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:107949600-107951400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:107949600-107958200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:107949800-107950200	Flanking Active TSS	A549	lung
6	chr9:107949800-107950400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:107949800-107950400	Enhancers	NH-A	brain
8	chr9:107949800-107950600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:107949800-107950600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:107949800-107950800	Enhancers	NHDF-Ad	bronchial
11	chr9:107949800-107950800	Enhancers	Osteobl	bone
12	chr9:107949800-107951000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr9:107949800-107951200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:107949800-107951200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr9:107949800-107952400	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr9:107950000-107950400	Enhancers	HepG2	liver
17	chr9:107950000-107950400	Enhancers	HUVEC	blood vessel
18	chr9:107950000-107950600	Enhancers	HSMM	muscle
19	chr9:107950000-107951200	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links