Variant report

Variant	rs786692
Chromosome Location	chr10:28531290-28531291
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr10:28530317-28531376	HCT-116	colon:	n/a	chr10:28530904-28530923 chr10:28530914-28530921
2	CTCF	chr10:28530189-28531292	A549	lung:	n/a	chr10:28530906-28530924 chr10:28530907-28530923 chr10:28530901-28530922

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28529981..28531493-chr10:28533633..28535670,2	K562	blood:

Variant related genes	Relation type
MPP7	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7091086	1.00[ASN][1000 genomes]
rs7091235	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv831817	chr10:28369836-28539930	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28498200-28537000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:28502000-28531600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:28519000-28552000	Weak transcription	Fetal Stomach	stomach
4	chr10:28521200-28538600	Weak transcription	Left Ventricle	heart
5	chr10:28521800-28544400	Weak transcription	Pancreas	Pancrea
6	chr10:28522000-28531400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:28522400-28537000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:28523600-28531400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:28524000-28537000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:28524200-28537000	Weak transcription	Esophagus	oesophagus
11	chr10:28524800-28536600	Weak transcription	HSMM	muscle
12	chr10:28525800-28537000	Weak transcription	Aorta	Aorta
13	chr10:28526200-28531400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:28526800-28531400	Weak transcription	Primary T cells from cord blood	blood
15	chr10:28527600-28531400	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr10:28527600-28531400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:28527600-28539600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr10:28530400-28532000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:28530400-28532200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr10:28530400-28532600	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr10:28530600-28532400	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr10:28530600-28532400	Enhancers	Stomach Smooth Muscle	stomach
23	chr10:28530600-28532600	Enhancers	HepG2	liver
24	chr10:28530600-28532800	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr10:28530800-28531600	Weak transcription	Fetal Lung	lung
26	chr10:28530800-28531800	Weak transcription	Colon Smooth Muscle	Colon
27	chr10:28530800-28533200	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr10:28531000-28531800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr10:28531000-28532600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr10:28531000-28532800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr10:28531000-28532800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:28531000-28532800	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr10:28531000-28533200	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr10:28531200-28532400	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr10:28531200-28532600	Enhancers	Primary B cells from cord blood	blood
36	chr10:28531200-28532600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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