Variant report

Variant	rs7867633
Chromosome Location	chr9:16527829-16527830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:16519927..16521803-chr9:16525394..16528325,2	K562	blood:
2	chr9:16518671..16520605-chr9:16526925..16528585,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10962471	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12345489	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs12345513	1.00[MEX][hapmap]
rs16934765	1.00[CEU][hapmap]
rs1927628	1.00[CEU][hapmap]
rs7025065	0.90[GIH][hapmap]
rs7031782	0.90[GIH][hapmap]
rs73645992	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1028923	chr9:16519711-16547863	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16515600-16532600	Weak transcription	Aorta	Aorta
2	chr9:16520200-16535400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:16522600-16530600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr9:16522600-16530800	Weak transcription	Psoas Muscle	Psoas
5	chr9:16522800-16530800	Weak transcription	Ovary	ovary
6	chr9:16522800-16531800	Weak transcription	Fetal Kidney	kidney
7	chr9:16522800-16540800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr9:16523000-16530000	Weak transcription	Colon Smooth Muscle	Colon
9	chr9:16523000-16530200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:16523000-16530600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr9:16523000-16535400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:16523200-16530400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:16523200-16530400	Weak transcription	Fetal Stomach	stomach
14	chr9:16523200-16530600	Weak transcription	HSMM	muscle
15	chr9:16523200-16530800	Weak transcription	Small Intestine	intestine
16	chr9:16523200-16530800	Weak transcription	NHLF	lung
17	chr9:16523200-16532200	Weak transcription	NHDF-Ad	bronchial
18	chr9:16525000-16551400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr9:16525400-16531200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr9:16525800-16531400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr9:16525800-16532800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr9:16526800-16528000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr9:16527000-16530400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr9:16527000-16530600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:16527000-16530600	Weak transcription	A549	lung
26	chr9:16527000-16532400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:16527000-16533200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr9:16527200-16528200	Enhancers	Fetal Lung	lung
29	chr9:16527200-16530200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr9:16527200-16530200	Weak transcription	NHEK	skin
31	chr9:16527200-16530600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr9:16527400-16528200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr9:16527400-16530200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr9:16527400-16530400	Weak transcription	HMEC	breast
35	chr9:16527400-16532400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr9:16527400-16532400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr9:16527400-16532400	Weak transcription	NH-A	brain
38	chr9:16527600-16531400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr9:16527800-16528000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr9:16527800-16530600	Weak transcription	Osteobl	bone
41	chr9:16527800-16532200	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links