Variant report

Variant	rs78677412
Chromosome Location	chr11:85883921-85883922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85809081..85811132-chr11:85882355..85885096,2	K562	blood:
2	chr11:85778265..85780828-chr11:85883651..85886278,2	K562	blood:
3	chr11:85858516..85861097-chr11:85882162..85885113,2	K562	blood:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	esv2757460	chr11:85869944-85905513	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759846	chr11:85869944-85905513	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1040400	chr11:85883303-85898809	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1043422	chr11:85883840-85898809	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85873600-85884000	Weak transcription	Right Atrium	heart
2	chr11:85874000-85885400	Weak transcription	Small Intestine	intestine
3	chr11:85874200-85884000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:85874600-85884000	Weak transcription	A549	lung
5	chr11:85876000-85884000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:85879000-85884000	Weak transcription	Brain Anterior Caudate	brain
7	chr11:85879000-85885600	Weak transcription	Psoas Muscle	Psoas
8	chr11:85879200-85884200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:85879200-85884600	Weak transcription	Liver	Liver
10	chr11:85879400-85884000	Weak transcription	Fetal Lung	lung
11	chr11:85879400-85884800	Weak transcription	HepG2	liver
12	chr11:85879800-85884200	Weak transcription	Fetal Stomach	stomach
13	chr11:85882200-85885200	Enhancers	K562	blood
14	chr11:85882400-85884600	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr11:85882400-85884800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr11:85882400-85885200	Enhancers	Hela-S3	cervix
17	chr11:85882600-85884800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:85882600-85887000	Enhancers	Fetal Muscle Leg	muscle
19	chr11:85882600-85887800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:85882600-85890800	Enhancers	Placenta	Placenta
21	chr11:85882600-85891600	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr11:85882800-85884800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:85882800-85885200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr11:85882800-85886400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:85883000-85885200	Weak transcription	Spleen	Spleen
26	chr11:85883200-85885800	Enhancers	Brain Hippocampus Middle	brain
27	chr11:85883200-85888000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:85883200-85891400	Weak transcription	Thymus	Thymus
29	chr11:85883400-85887200	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr11:85883400-85888200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:85883400-85888800	Enhancers	HMEC	breast
32	chr11:85883600-85884800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:85883600-85885400	Enhancers	NHEK	skin
34	chr11:85883600-85885600	Enhancers	Muscle Satellite Cultured Cells	--
35	chr11:85883600-85885600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:85883600-85885800	Enhancers	Primary hematopoietic stem cells	blood
37	chr11:85883600-85888000	Enhancers	HUVEC	blood vessel
38	chr11:85883600-85888800	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr11:85883600-85889000	Enhancers	Osteobl	bone
40	chr11:85883800-85884200	Enhancers	Fetal Kidney	kidney
41	chr11:85883800-85884400	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr11:85883800-85884800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:85883800-85885400	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr11:85883800-85885600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr11:85883800-85885600	Enhancers	Adipose Nuclei	Adipose
46	chr11:85883800-85885600	Enhancers	HSMM	muscle
47	chr11:85883800-85885600	Enhancers	NH-A	brain
48	chr11:85883800-85885800	Enhancers	Brain Angular Gyrus	brain
49	chr11:85883800-85886000	Enhancers	Brain Cingulate Gyrus	brain
50	chr11:85883800-85886000	Enhancers	Brain Substantia Nigra	brain

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