Variant report

Variant	rs7867941
Chromosome Location	chr9:71322390-71322391
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:71318506..71320929-chr9:71321155..71324459,4	K562	blood:
2	chr9:71317469..71321528-chr9:71322199..71324795,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107242	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10869245	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2151416	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2151418	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4352908	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4534183	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4744683	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4745223	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4745227	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4745229	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7853748	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7857057	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026962	chr9:71130848-71357605	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv2422258	chr9:71234845-71663340	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1017903	chr9:71276951-71690579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	esv2757339	chr9:71291107-71353743	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2759693	chr9:71291107-71353743	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2752385	chr9:71304465-71332240	Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71319000-71322400	Active TSS	Fetal Intestine Large	intestine
2	chr9:71319200-71323400	Active TSS	Rectal Smooth Muscle	rectum
3	chr9:71319400-71322400	Active TSS	Stomach Mucosa	stomach
4	chr9:71319600-71322600	Active TSS	Sigmoid Colon	Sigmoid Colon
5	chr9:71319600-71323200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:71319800-71322400	Active TSS	Right Atrium	heart
7	chr9:71319800-71322400	Active TSS	Right Ventricle	heart
8	chr9:71319800-71322600	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr9:71320800-71324200	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr9:71321000-71322400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:71321000-71322800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:71321200-71323200	Active TSS	Fetal Intestine Small	intestine
13	chr9:71321400-71322400	Active TSS	Brain Germinal Matrix	brain
14	chr9:71321400-71322400	Flanking Active TSS	K562	blood
15	chr9:71321400-71322800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr9:71321400-71322800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
17	chr9:71321400-71322800	Enhancers	Placenta Amnion	Placenta Amnion
18	chr9:71321600-71322400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
19	chr9:71321600-71323600	Flanking Active TSS	GM12878-XiMat	blood
20	chr9:71321800-71322400	Flanking Active TSS	Fetal Heart	heart
21	chr9:71321800-71322800	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr9:71321800-71329200	Weak transcription	Gastric	stomach
23	chr9:71321800-71329400	Weak transcription	Lung	lung
24	chr9:71322000-71322400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
25	chr9:71322000-71322600	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr9:71322000-71322600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
27	chr9:71322000-71322600	Active TSS	Brain Cingulate Gyrus	brain
28	chr9:71322000-71322600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr9:71322000-71322600	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
30	chr9:71322000-71322600	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr9:71322000-71322600	Flanking Active TSS	HepG2	liver
32	chr9:71322000-71322800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:71322000-71323400	Active TSS	Colonic Mucosa	Colon
34	chr9:71322000-71324800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr9:71322000-71329800	Weak transcription	Pancreas	Pancrea
36	chr9:71322000-71349400	Weak transcription	Aorta	Aorta
37	chr9:71322200-71322400	Active TSS	Duodenum Mucosa	Duodenum
38	chr9:71322200-71322400	Bivalent Enhancer	Fetal Kidney	kidney
39	chr9:71322200-71323600	Enhancers	Small Intestine	intestine
40	chr9:71322200-71324400	Enhancers	Primary B cells from peripheral blood	blood
41	chr9:71322200-71324800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr9:71322200-71329400	Weak transcription	Left Ventricle	heart
43	chr9:71322200-71335000	Weak transcription	Placenta	Placenta

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