Variant report

Variant	rs7868395
Chromosome Location	chr9:26026125-26026126
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10738742	0.95[ASN][1000 genomes]
rs10757585	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10757586	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10757587	0.89[ASN][1000 genomes]
rs10967166	0.99[ASN][1000 genomes]
rs11999727	0.84[ASN][1000 genomes]
rs12003137	0.90[ASN][1000 genomes]
rs12006532	0.84[ASN][1000 genomes]
rs12551101	0.84[ASN][1000 genomes]
rs1412457	0.88[ASN][1000 genomes]
rs1855030	0.85[ASN][1000 genomes]
rs2383610	0.93[ASN][1000 genomes]
rs4585828	0.84[ASN][1000 genomes]
rs4978032	0.99[ASN][1000 genomes]
rs59661992	0.84[ASN][1000 genomes]
rs62543701	0.83[ASN][1000 genomes]
rs7032641	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7035174	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015883	chr9:25633359-26315286	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv892839	chr9:25750661-26050209	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892840	chr9:25867219-26034314	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv613921	chr9:25952529-26028352	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv892842	chr9:25954098-26102954	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv613922	chr9:26005487-26028352	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv466324	chr9:26005487-26112748	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv613923	chr9:26005487-26112748	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv613924	chr9:26009632-26037974	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26025200-26026200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr9:26025200-26029200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr9:26025200-26030200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr9:26025400-26028800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr9:26025600-26027000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:26025600-26027000	Enhancers	H9 Cell Line	embryonic stem cell
7	chr9:26025600-26028200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr9:26025800-26027200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:26026000-26027200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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