Variant report

Variant	rs7868457
Chromosome Location	chr9:71071438-71071439
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11142500	1.00[AMR][1000 genomes]
rs1389032	0.85[AFR][1000 genomes]
rs58674993	1.00[EUR][1000 genomes]
rs59438464	1.00[AMR][1000 genomes]
rs61145814	0.97[AFR][1000 genomes]
rs6560131	1.00[AFR][1000 genomes]
rs7027250	0.85[AFR][1000 genomes]
rs7038754	0.97[AFR][1000 genomes]
rs7040997	0.97[AFR][1000 genomes]
rs72714328	0.89[AFR][1000 genomes]
rs7854021	0.97[AFR][1000 genomes]
rs7854624	0.94[AFR][1000 genomes]
rs7854926	0.94[AFR][1000 genomes]
rs7862924	1.00[AFR][1000 genomes]
rs7867443	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71051200-71091800	Weak transcription	Psoas Muscle	Psoas
2	chr9:71062200-71075800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr9:71062400-71072200	Weak transcription	Fetal Heart	heart
4	chr9:71065800-71080000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:71067800-71077000	Weak transcription	Lung	lung
6	chr9:71069800-71075600	Weak transcription	Right Ventricle	heart
7	chr9:71070200-71087000	Weak transcription	Aorta	Aorta
8	chr9:71070600-71076000	Weak transcription	Right Atrium	heart
9	chr9:71070800-71100800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr9:71071000-71072200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr9:71071000-71072200	Weak transcription	Fetal Lung	lung
12	chr9:71071000-71072200	Weak transcription	Fetal Stomach	stomach
13	chr9:71071000-71072600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr9:71071000-71072800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr9:71071200-71071600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr9:71071400-71071800	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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