Variant report

Variant	rs7868770
Chromosome Location	chr9:85813223-85813224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58814988	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7046038	0.83[EUR][1000 genomes]
rs7048714	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7851573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7872136	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831642	chr9:85679425-85817338	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85811800-85813400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:85811800-85813600	Enhancers	Fetal Heart	heart
3	chr9:85812000-85813400	Enhancers	Brain Germinal Matrix	brain
4	chr9:85812200-85813600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:85812400-85813400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr9:85812400-85813400	Weak transcription	Fetal Brain Male	brain
7	chr9:85812400-85813600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:85812600-85815000	Enhancers	Fetal Stomach	stomach
9	chr9:85813200-85813400	Flanking Active TSS	Fetal Brain Female	brain
10	chr9:85813200-85813600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr9:85813200-85813600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr9:85813200-85813600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
13	chr9:85813200-85813800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr9:85813200-85813800	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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