Variant report

Variant	rs7869538
Chromosome Location	chr9:73976039-73976040
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10746868	1.00[AMR][1000 genomes]
rs10781001	1.00[AMR][1000 genomes]
rs2309919	1.00[AMR][1000 genomes]
rs7040597	1.00[AMR][1000 genomes]
rs7859507	1.00[AMR][1000 genomes]
rs7867439	1.00[AMR][1000 genomes]
rs983286	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893442	chr9:73778502-74115344	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv893443	chr9:73859086-74008905	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv916062	chr9:73861614-74246247	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv1797700	chr9:73923177-74091305	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1050049	chr9:73948358-74012975	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73971000-73976400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:73972400-73978000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:73972600-73976200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr9:73972600-73976400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:73972600-73976400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr9:73972600-73976400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:73972600-73978000	Weak transcription	NHDF-Ad	bronchial
8	chr9:73972600-73978200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:73973000-73976200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr9:73973600-73976200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr9:73973800-73976200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr9:73974400-73978600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:73975600-73978400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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