Variant report

Variant	rs78699537
Chromosome Location	chr9:86041599-86041600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1048086	chr9:86040900-86059732	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86021200-86041600	Weak transcription	Right Ventricle	heart
2	chr9:86037800-86047200	Weak transcription	Fetal Stomach	stomach
3	chr9:86038400-86045800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:86038400-86046600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr9:86039200-86050000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:86040000-86045800	Weak transcription	Fetal Lung	lung
7	chr9:86040000-86045800	Weak transcription	Small Intestine	intestine
8	chr9:86040000-86046000	Weak transcription	Fetal Heart	heart
9	chr9:86040200-86046600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr9:86040400-86045800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr9:86040400-86050000	Weak transcription	Fetal Intestine Large	intestine
12	chr9:86040800-86042400	Enhancers	Left Ventricle	heart
13	chr9:86041000-86041800	Enhancers	Ovary	ovary
14	chr9:86041000-86041800	Enhancers	Spleen	Spleen
15	chr9:86041000-86042200	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr9:86041000-86042200	Enhancers	Aorta	Aorta
17	chr9:86041000-86042400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr9:86041000-86042400	Enhancers	Adipose Nuclei	Adipose
19	chr9:86041000-86042400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr9:86041200-86041800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr9:86041200-86042000	Enhancers	Fetal Muscle Leg	muscle
22	chr9:86041200-86042000	Genic enhancers	HepG2	liver
23	chr9:86041200-86042200	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr9:86041200-86042200	Enhancers	Colon Smooth Muscle	Colon
25	chr9:86041200-86042200	Enhancers	Lung	lung
26	chr9:86041200-86042200	Enhancers	Right Atrium	heart
27	chr9:86041200-86042200	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr9:86041200-86042400	Enhancers	Gastric	stomach
29	chr9:86041400-86041600	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr9:86041400-86041800	Enhancers	Brain Angular Gyrus	brain
31	chr9:86041400-86041800	Enhancers	Pancreas	Pancrea
32	chr9:86041400-86041800	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr9:86041400-86041800	Enhancers	Stomach Smooth Muscle	stomach
34	chr9:86041400-86042200	Enhancers	Brain Cingulate Gyrus	brain
35	chr9:86041400-86042200	Enhancers	Psoas Muscle	Psoas
36	chr9:86041400-86042200	Enhancers	Skeletal Muscle Female	skeletal muscle

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