Variant report

Variant	rs78709455
Chromosome Location	chr5:74160435-74160436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:74160377-74163048	HepG2	liver:	n/a	n/a
2	POLR2A	chr5:74160383-74160568	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr5:74160110-74160838	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr5:74160249-74161841	HepG2	liver:	n/a	n/a
5	KAP1	chr5:74160385-74161861	HEK293	kidney:	n/a	n/a
6	HEY1	chr5:74160345-74163102	HepG2	liver:	n/a	chr5:74161997-74162012 chr5:74162243-74162258 chr5:74162276-74162291 chr5:74162345-74162360

Variant related genes	Relation type
ENSG00000271714	TF binding region

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3338870	chr5:74159996-74164294	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74147400-74161000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:74148200-74161200	Weak transcription	Right Atrium	heart
3	chr5:74148800-74160600	Weak transcription	A549	lung
4	chr5:74148800-74160800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:74149400-74160600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr5:74149400-74160800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr5:74157200-74161000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr5:74157800-74160800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:74158600-74161000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr5:74158600-74163000	Active TSS	H1 Cell Line	embryonic stem cell
11	chr5:74158800-74163800	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr5:74159000-74162800	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr5:74159400-74160600	Enhancers	Dnd41	blood
14	chr5:74159400-74160600	Enhancers	HMEC	breast
15	chr5:74159400-74160800	Enhancers	Brain Substantia Nigra	brain
16	chr5:74159400-74161000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr5:74159400-74161000	Flanking Active TSS	NHEK	skin
18	chr5:74159400-74163000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr5:74159400-74163000	Active TSS	H9 Cell Line	embryonic stem cell
20	chr5:74159400-74163800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr5:74159600-74160600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr5:74159600-74160600	Weak transcription	Brain Anterior Caudate	brain
23	chr5:74159600-74160800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr5:74159600-74161000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr5:74159600-74162800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr5:74159800-74160600	Weak transcription	Fetal Brain Male	brain
27	chr5:74159800-74160800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr5:74159800-74160800	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr5:74159800-74163000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr5:74160000-74162800	Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr5:74160000-74163000	Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr5:74160200-74160600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr5:74160200-74162200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr5:74160200-74163000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr5:74160200-74163000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr5:74160400-74160600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr5:74160400-74160600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr5:74160400-74160800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
39	chr5:74160400-74160800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
40	chr5:74160400-74160800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr5:74160400-74160800	Enhancers	Brain Hippocampus Middle	brain
42	chr5:74160400-74160800	Enhancers	Fetal Brain Female	brain
43	chr5:74160400-74161000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
44	chr5:74160400-74161400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr5:74160400-74161600	Bivalent/Poised TSS	HepG2	liver
46	chr5:74160400-74162800	Active TSS	Brain Inferior Temporal Lobe	brain
47	chr5:74160400-74163000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
48	chr5:74160400-74163000	Active TSS	Brain Angular Gyrus	brain
49	chr5:74160400-74163200	Active TSS	Brain Cingulate Gyrus	brain

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