Variant report

Variant	rs7870952
Chromosome Location	chr9:9970777-9970778
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10114140	0.85[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10123237	0.93[YRI][hapmap]
rs1217008	1.00[ASN][1000 genomes]
rs1217009	1.00[ASN][1000 genomes]
rs16930782	1.00[ASN][1000 genomes]
rs16930832	1.00[ASN][1000 genomes]
rs16930844	1.00[ASN][1000 genomes]
rs6477431	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7032996	0.80[EUR][1000 genomes]
rs7033099	0.80[EUR][1000 genomes]
rs7870418	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7870686	0.85[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:42 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034731	chr9:9776126-10481262	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892295	chr9:9832245-10380406	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1022172	chr9:9841432-9975529	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1022613	chr9:9857456-9985419	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv539986	chr9:9857456-9985419	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv613359	chr9:9904481-10008130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1031978	chr9:9905053-10006290	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv539987	chr9:9905053-10006290	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1025234	chr9:9905178-10011184	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1026679	chr9:9919783-10069385	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1032019	chr9:9919783-10070211	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv892299	chr9:9929916-9974221	Flanking Active TSS Active TSS Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	nsv1016880	chr9:9941673-9996437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
14	nsv1023110	chr9:9941673-9997877	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
15	nsv1017809	chr9:9943339-9994698	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
16	nsv539988	chr9:9943339-9994698	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
17	nsv1021380	chr9:9943339-10126281	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv539989	chr9:9943339-10126281	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv1017182	chr9:9945265-10011933	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
20	nsv1018157	chr9:9945648-10014310	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
21	nsv1017405	chr9:9950856-10006290	ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers	n/a	n/a	inside rSNPs	diseases
22	nsv539990	chr9:9950856-10006290	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
23	nsv471278	chr9:9957866-9972321	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
24	nsv613365	chr9:9957866-9972321	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
25	nsv525613	chr9:9957866-10011571	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	n/a	n/a	inside rSNPs	diseases
26	nsv526124	chr9:9957866-10011571	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
27	nsv613366	chr9:9957866-10011571	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
28	nsv613367	chr9:9957866-10025975	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
29	nsv1029813	chr9:9960375-9997877	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
30	nsv892300	chr9:9960537-9978178	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
31	nsv466153	chr9:9962204-9971050	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
32	nsv613368	chr9:9962204-9971050	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
33	nsv466154	chr9:9962204-9993029	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
34	nsv613369	chr9:9962204-9993029	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
35	esv2757312	chr9:9962603-9974221	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
36	esv2759665	chr9:9962603-9974221	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
37	nsv1031879	chr9:9963095-9994837	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
38	nsv539991	chr9:9963095-9994837	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
39	esv3482960	chr9:9965144-9972037	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
40	esv3482961	chr9:9965144-9972037	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
41	nsv824849	chr9:9965191-9971944	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
42	nsv818684	chr9:9968038-9971050	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9970000-9972800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:9970600-9971000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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