Variant report

Variant	rs7871051
Chromosome Location	chr9:118047749-118047750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1335331	1.00[ASN][1000 genomes]
rs1335347	1.00[ASN][1000 genomes]
rs16932361	1.00[ASN][1000 genomes]
rs16932366	1.00[ASN][1000 genomes]
rs16932367	1.00[ASN][1000 genomes]
rs7021343	1.00[ASN][1000 genomes]
rs7033388	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118042800-118052800	Weak transcription	Gastric	stomach
2	chr9:118044200-118051800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr9:118047200-118049200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:118047400-118049000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:118047600-118048800	Enhancers	NHDF-Ad	bronchial
6	chr9:118047600-118052800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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