Variant report

Variant	rs7871159
Chromosome Location	chr9:108516581-108516582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr9:108516574-108517060	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000232486	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1396754	1.00[AFR][1000 genomes]
rs55724983	1.00[AFR][1000 genomes]
rs7047774	0.82[AFR][1000 genomes]
rs71366016	0.82[AFR][1000 genomes]
rs7853197	1.00[AFR][1000 genomes]
rs7868879	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv615116	chr9:108468129-108546438	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108498400-108520000	Weak transcription	Fetal Heart	heart
2	chr9:108498400-108520400	Weak transcription	Psoas Muscle	Psoas
3	chr9:108510000-108517000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
4	chr9:108510200-108517000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:108512000-108516600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr9:108513800-108516600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:108513800-108521400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:108514000-108520400	Weak transcription	Right Ventricle	heart
9	chr9:108514000-108540000	Weak transcription	HSMMtube	muscle
10	chr9:108514200-108516600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr9:108514200-108517000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr9:108514200-108517400	Weak transcription	Esophagus	oesophagus
13	chr9:108514200-108520400	Weak transcription	Gastric	stomach
14	chr9:108514200-108520400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr9:108514800-108517000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr9:108514800-108517600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr9:108514800-108520400	Weak transcription	Lung	lung
18	chr9:108514800-108520400	Weak transcription	Pancreas	Pancrea
19	chr9:108514800-108520600	Weak transcription	Fetal Stomach	stomach
20	chr9:108514800-108521400	Weak transcription	Spleen	Spleen
21	chr9:108515000-108517200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
22	chr9:108515200-108520400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr9:108515200-108521000	Weak transcription	Dnd41	blood
24	chr9:108515200-108522800	Weak transcription	Left Ventricle	heart
25	chr9:108515200-108545000	Weak transcription	K562	blood
26	chr9:108515200-108560600	Weak transcription	Ovary	ovary
27	chr9:108515400-108516600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr9:108515400-108517000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr9:108515400-108519200	Weak transcription	Aorta	Aorta
30	chr9:108515400-108520000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr9:108515400-108520200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr9:108515400-108523400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr9:108515400-108536800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr9:108515600-108522400	Weak transcription	Liver	Liver
35	chr9:108515600-108538600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr9:108516000-108516800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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