Variant report

Variant	rs7871160
Chromosome Location	chr9:95898109-95898110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:95898065-95898196	HepG2	liver:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95896653..95898441-chr9:96214001..96215918,2	K562	blood:
2	chr9:95895042..95899051-chr9:95945154..95949540,5	MCF-7	breast:
3	chr9:95818120..95822805-chr9:95894646..95898384,4	K562	blood:
4	chr9:95893768..95895658-chr9:95897377..95900133,3	K562	blood:
5	chr9:95856253..95862485-chr9:95892353..95899486,12	MCF-7	breast:
6	chr9:95733025..95737240-chr9:95894074..95898257,5	MCF-7	breast:
7	chr9:95894803..95898160-chr9:96337820..96340366,3	MCF-7	breast:
8	chr9:95897165..95898764-chr9:95898859..95901008,2	K562	blood:
9	chr9:95855662..95862507-chr9:95894736..95899302,16	MCF-7	breast:

No data

Variant related genes	Relation type
NINJ1	TF binding region
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction
ENSG00000223446	Chromatin interaction
ENSG00000197724	Chromatin interaction
ENSG00000165238	Chromatin interaction
ENSG00000157303	Chromatin interaction
ENSG00000127084	Chromatin interaction
ENSG00000165233	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7871154	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	esv1824329	chr9:95811604-95921347	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv893579	chr9:95855100-95923091	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv893581	chr9:95872216-95930334	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95896000-95899200	Enhancers	Fetal Brain Male	brain
2	chr9:95897200-95898200	Weak transcription	NHLF	lung
3	chr9:95897200-95898400	Weak transcription	Gastric	stomach
4	chr9:95897200-95898600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:95897200-95898600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr9:95897200-95898600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr9:95897200-95898600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr9:95897200-95898600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:95897200-95898600	Enhancers	Brain Angular Gyrus	brain
10	chr9:95897200-95898600	Enhancers	Brain Substantia Nigra	brain
11	chr9:95897200-95898600	Enhancers	Fetal Brain Female	brain
12	chr9:95897200-95898600	Enhancers	Ovary	ovary
13	chr9:95897200-95898600	Enhancers	Right Ventricle	heart
14	chr9:95897200-95898600	Enhancers	A549	lung
15	chr9:95897200-95898600	Enhancers	GM12878-XiMat	blood
16	chr9:95897200-95898800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:95897200-95899200	Enhancers	Brain Anterior Caudate	brain
18	chr9:95897200-95899200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr9:95897200-95899200	Enhancers	Pancreas	Pancrea
20	chr9:95897200-95899400	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr9:95897200-95899400	Enhancers	Placenta	Placenta
22	chr9:95897200-95900200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr9:95897200-95900400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr9:95897200-95900400	Enhancers	Esophagus	oesophagus
25	chr9:95897200-95900400	Enhancers	Fetal Muscle Leg	muscle
26	chr9:95897200-95901000	Enhancers	Brain Cingulate Gyrus	brain
27	chr9:95897200-95902400	Enhancers	Primary B cells from peripheral blood	blood
28	chr9:95897200-95906200	Weak transcription	Right Atrium	heart
29	chr9:95897400-95898400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr9:95897400-95898400	Weak transcription	Brain Germinal Matrix	brain
31	chr9:95897400-95898400	Weak transcription	Fetal Lung	lung
32	chr9:95897400-95898400	Enhancers	Fetal Stomach	stomach
33	chr9:95897400-95898400	Weak transcription	K562	blood
34	chr9:95897400-95898400	Weak transcription	NH-A	brain
35	chr9:95897400-95898600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr9:95897400-95898600	Enhancers	Liver	Liver
37	chr9:95897400-95898600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr9:95897400-95898600	Enhancers	Duodenum Mucosa	Duodenum
39	chr9:95897400-95898600	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr9:95897400-95898600	Enhancers	HSMM	muscle
41	chr9:95897400-95898600	Enhancers	HSMMtube	muscle
42	chr9:95897400-95899000	Enhancers	Brain Hippocampus Middle	brain
43	chr9:95897400-95900400	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr9:95897400-95900800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
45	chr9:95897400-95901000	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr9:95897400-95906200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr9:95897600-95898400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr9:95897600-95898400	Weak transcription	Left Ventricle	heart
49	chr9:95897600-95898400	Weak transcription	Lung	lung
50	chr9:95897600-95898400	Weak transcription	Spleen	Spleen

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