Variant report

Variant	rs787160
Chromosome Location	chr2:144650140-144650141
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4662216	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532755	chr2:144631279-145270874	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144643800-144651200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:144648400-144651200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
3	chr2:144648800-144650800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:144648800-144651200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:144649000-144650200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:144649000-144650600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr2:144649000-144650600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:144649000-144651000	Weak transcription	Fetal Lung	lung
9	chr2:144649200-144650200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:144649200-144650600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr2:144649400-144650200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr2:144649400-144650600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr2:144649400-144650800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr2:144649600-144651400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr2:144649600-144657200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr2:144649800-144650400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr2:144649800-144650800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr2:144650000-144650400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr2:144650000-144650800	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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