Variant report

Variant	rs7871664
Chromosome Location	chr9:71199866-71199867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:71199104..71200136-chr9:71459624..71460607,5	MCF-7	breast:
2	chr9:71199034..71199992-chr9:71614240..71615302,11	MCF-7	breast:
3	chr9:71199401..71199961-chr9:71318970..71319652,2	MCF-7	breast:
4	chr9:71199440..71199949-chr9:71642261..71643160,3	MCF-7	breast:
5	chr9:71199122..71199964-chr9:71614246..71615122,3	K562	blood:
6	chr9:71199101..71200031-chr9:71292976..71293754,4	MCF-7	breast:
7	chr9:71198876..71200125-chr9:71300333..71301861,19	MCF-7	breast:
8	chr9:71199142..71200264-chr9:71459602..71460948,4	K562	blood:
9	chr9:71199112..71200053-chr9:71300525..71301257,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf71-3	chr9:71199042-71200149	l_3782_chr9:71199041-71203573_breast

No data

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10125634	1.00[CEU][hapmap]
rs11143017	1.00[AMR][1000 genomes]
rs12344499	1.00[AMR][1000 genomes]
rs1389032	1.00[CEU][hapmap]
rs1532235	1.00[CEU][hapmap]
rs4543606	1.00[AMR][1000 genomes]
rs56927673	0.83[AMR][1000 genomes]
rs56939390	1.00[AMR][1000 genomes]
rs58052171	0.83[AMR][1000 genomes]
rs59282446	0.83[AMR][1000 genomes]
rs59647191	0.83[AMR][1000 genomes]
rs6560256	0.85[AMR][1000 genomes]
rs7027250	1.00[CEU][hapmap]
rs7028925	1.00[CEU][hapmap]
rs7038692	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7043096	0.83[AMR][1000 genomes]
rs7045327	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs73449563	0.83[AMR][1000 genomes]
rs73449572	1.00[AMR][1000 genomes]
rs7848245	1.00[CEU][hapmap]
rs7849863	1.00[AMR][1000 genomes]
rs7854021	1.00[CEU][hapmap]
rs7862924	1.00[CEU][hapmap]
rs7867443	1.00[CEU][hapmap]
rs7873037	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024967	chr9:71130848-71210031	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482506	chr9:71130848-71280888	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv466392	chr9:71130848-71318817	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv614546	chr9:71130848-71318817	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1026962	chr9:71130848-71357605	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv893414	chr9:71139378-71320732	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71199000-71200200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:71199200-71200400	Enhancers	Primary B cells from peripheral blood	blood
3	chr9:71199600-71200600	Enhancers	Primary B cells from cord blood	blood

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