Variant report

Variant	rs7872003
Chromosome Location	chr9:101092637-101092638
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs7021314	1.00[AMR][1000 genomes]
rs7031028	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7034571	1.00[AMR][1000 genomes]
rs7037748	1.00[AMR][1000 genomes]
rs7041874	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7849196	1.00[AMR][1000 genomes]
rs7849698	1.00[AMR][1000 genomes]
rs7863839	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3325750	chr9:101090308-101093680	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101085600-101093800	Weak transcription	Lung	lung
2	chr9:101087200-101093800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:101087200-101094000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:101087400-101096000	Weak transcription	Osteobl	bone
5	chr9:101087400-101096400	Weak transcription	NH-A	brain
6	chr9:101089000-101096000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:101089600-101093200	Weak transcription	K562	blood
8	chr9:101090400-101094200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:101090400-101098400	Enhancers	HUVEC	blood vessel
10	chr9:101091000-101095400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:101091200-101095200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr9:101091400-101094400	Enhancers	NHDF-Ad	bronchial
13	chr9:101091600-101093400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:101092000-101092800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:101092000-101093800	Weak transcription	NHLF	lung
16	chr9:101092000-101096000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr9:101092200-101095800	Weak transcription	HMEC	breast
18	chr9:101092600-101097000	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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