Variant report

Variant	rs7872832
Chromosome Location	chr9:108211179-108211180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10991660	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10991682	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs11999966	1.00[ASW][hapmap];0.81[CEU][hapmap];0.81[GIH][hapmap];0.89[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap]
rs12004886	0.88[CEU][hapmap];0.96[YRI][hapmap]
rs12342071	1.00[ASW][hapmap];0.81[CEU][hapmap];0.87[GIH][hapmap];0.98[MKK][hapmap];0.92[YRI][hapmap]
rs12342465	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13362922	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1808155	0.80[EUR][1000 genomes]
rs2149592	1.00[ASW][hapmap];0.81[CEU][hapmap];0.87[GIH][hapmap];0.81[LWK][hapmap];0.98[MKK][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs2149593	1.00[ASW][hapmap];0.81[CEU][hapmap];0.89[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs7033452	1.00[CEU][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs7034699	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7034702	1.00[ASW][hapmap];0.80[CEU][hapmap];0.86[GIH][hapmap];0.89[LWK][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs7867012	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.82[EUR][1000 genomes]
rs7870485	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9969773	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1053973	chr9:108199177-108300186	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv615115	chr9:108205262-108298183	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108209600-108211200	Active TSS	Brain Angular Gyrus	brain
2	chr9:108209600-108211400	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr9:108209600-108211400	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr9:108209600-108211400	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr9:108209600-108211400	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr9:108209600-108211400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:108209600-108211400	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr9:108209600-108211400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:108209600-108211400	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr9:108209600-108211600	Active TSS	H1 Cell Line	embryonic stem cell
11	chr9:108209600-108211600	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr9:108209600-108211600	Active TSS	Fetal Brain Female	brain
13	chr9:108209600-108211600	Active TSS	Fetal Intestine Small	intestine
14	chr9:108209600-108211600	Active TSS	K562	blood
15	chr9:108209600-108211800	Active TSS	H9 Cell Line	embryonic stem cell
16	chr9:108209600-108211800	Active TSS	Fetal Kidney	kidney
17	chr9:108209600-108211800	Active TSS	NHDF-Ad	bronchial
18	chr9:108209600-108212000	Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr9:108209800-108211200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr9:108209800-108211200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr9:108209800-108211200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr9:108209800-108211200	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr9:108209800-108211200	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr9:108209800-108211200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr9:108209800-108211200	Active TSS	Aorta	Aorta
26	chr9:108209800-108211200	Active TSS	Lung	lung
27	chr9:108209800-108211200	Active TSS	Ovary	ovary
28	chr9:108209800-108211400	Active TSS	Colon Smooth Muscle	Colon
29	chr9:108209800-108211400	Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr9:108209800-108212000	Active TSS	HSMMtube	muscle
31	chr9:108209800-108212200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr9:108209800-108212400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr9:108209800-108212800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr9:108210000-108211200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:108210000-108211200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr9:108210000-108211200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
37	chr9:108210000-108211200	Active TSS	Colonic Mucosa	Colon
38	chr9:108210000-108211200	Active TSS	Left Ventricle	heart
39	chr9:108210000-108211200	Active TSS	Osteobl	bone
40	chr9:108210000-108211400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
41	chr9:108210000-108211400	Active TSS	Brain Substantia Nigra	brain
42	chr9:108210000-108211400	Active TSS	Right Atrium	heart
43	chr9:108210000-108211400	Active TSS	Right Ventricle	heart
44	chr9:108210000-108211400	Active TSS	Stomach Mucosa	stomach
45	chr9:108210000-108211400	Active TSS	NHEK	skin
46	chr9:108210000-108211800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr9:108210000-108211800	Active TSS	A549	lung
48	chr9:108210000-108212000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr9:108210000-108212000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr9:108210000-108212000	Active TSS	Fetal Stomach	stomach

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