Variant report

Variant	rs7872838
Chromosome Location	chr9:16606626-16606627
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10117448	0.84[AMR][1000 genomes]
rs10121959	0.83[AMR][1000 genomes]
rs10511622	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10738439	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10756763	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10962488	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10962492	0.83[AMR][1000 genomes]
rs10962493	0.82[AMR][1000 genomes]
rs10962511	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12000426	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12002673	0.83[AMR][1000 genomes]
rs12338548	0.86[AMR][1000 genomes]
rs12343239	0.83[AMR][1000 genomes]
rs12343306	0.83[AMR][1000 genomes]
rs12350853	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12352543	0.81[AMR][1000 genomes]
rs1337391	0.94[ASN][1000 genomes]
rs1415473	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1807023	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1927616	0.86[AMR][1000 genomes]
rs1927617	0.83[AMR][1000 genomes]
rs1952345	0.82[AMR][1000 genomes]
rs2065937	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2382808	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2382809	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2382810	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28414647	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28483319	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28593297	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28602416	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28714603	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28733737	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2891072	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56170891	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6475059	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6475060	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6475062	0.83[AMR][1000 genomes]
rs6475063	0.83[AMR][1000 genomes]
rs7021199	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7022813	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7030387	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7035791	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7049082	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7856477	0.91[AMR][1000 genomes]
rs7858025	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7859395	0.84[AFR][1000 genomes]
rs7863885	0.83[AMR][1000 genomes]
rs7870380	0.83[AMR][1000 genomes]
rs7872747	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943744	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs943745	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv524264	chr9:16596071-16611692	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv430000	chr9:16603483-16671045	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16583000-16606800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:16583200-16611200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:16595000-16611200	Weak transcription	NHLF	lung
4	chr9:16597600-16610800	Weak transcription	Fetal Stomach	stomach
5	chr9:16598800-16608200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr9:16598800-16611400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:16599000-16607000	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:16599000-16612200	Weak transcription	Osteobl	bone
9	chr9:16599000-16612600	Weak transcription	HSMM	muscle
10	chr9:16602200-16607800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr9:16602400-16608000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr9:16602600-16608800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr9:16602800-16608600	Weak transcription	Ovary	ovary
14	chr9:16602800-16608800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr9:16602800-16612400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr9:16603200-16612600	Weak transcription	HUVEC	blood vessel
17	chr9:16604600-16608800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:16605000-16606800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:16605600-16607600	Weak transcription	Fetal Lung	lung
20	chr9:16606200-16613600	Weak transcription	HSMMtube	muscle
21	chr9:16606200-16615000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr9:16606400-16607200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr9:16606600-16607400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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