Variant report

Variant	rs7873081
Chromosome Location	chr9:110010029-110010030
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110000595..110013733-chr9:110042800..110048700,27	MCF-7	breast:
2	chr9:110009341..110011173-chr9:110013824..110016663,3	MCF-7	breast:
3	chr9:110007992..110013194-chr9:110021107..110025881,5	MCF-7	breast:
4	chr9:110004582..110011651-chr9:110041707..110048879,25	MCF-7	breast:
5	chr9:110009648..110012591-chr9:110013011..110015349,2	K562	blood:
6	chr9:110007873..110010290-chr9:110031092..110033178,2	K562	blood:

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10739232	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10759218	0.87[ASN][1000 genomes]
rs10759219	0.95[ASN][1000 genomes]
rs10759220	0.95[ASN][1000 genomes]
rs10759221	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10816471	0.87[ASN][1000 genomes]
rs10816472	0.87[ASN][1000 genomes]
rs10816475	0.85[EUR][1000 genomes]
rs10978764	0.87[ASN][1000 genomes]
rs10978765	0.87[ASN][1000 genomes]
rs10978766	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10978770	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1519051	0.87[ASN][1000 genomes]
rs1519052	0.87[ASN][1000 genomes]
rs1535766	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1535767	0.87[ASN][1000 genomes]
rs2680218	0.87[ASN][1000 genomes]
rs2680219	0.87[ASN][1000 genomes]
rs2808364	0.87[ASN][1000 genomes]
rs4481670	0.87[ASN][1000 genomes]
rs7847661	0.87[ASN][1000 genomes]
rs7847784	0.87[ASN][1000 genomes]
rs7848194	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7852259	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7852295	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7861645	0.87[ASN][1000 genomes]
rs7861827	0.87[ASN][1000 genomes]
rs7862103	0.87[ASN][1000 genomes]
rs7866312	0.95[ASN][1000 genomes]
rs7866353	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7866797	0.95[ASN][1000 genomes]
rs7867706	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893698	chr9:109998563-110052660	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv508560	chr9:110006490-110060539	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110002000-110011400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr9:110002400-110011000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:110002400-110011200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:110002800-110010200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr9:110003400-110010400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:110003600-110010800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr9:110004200-110011200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr9:110006000-110011000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:110006200-110010800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:110006400-110010200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr9:110006400-110010400	Weak transcription	HSMM	muscle
12	chr9:110006400-110011000	Weak transcription	NHLF	lung
13	chr9:110006400-110011000	Weak transcription	Osteobl	bone
14	chr9:110006400-110011200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:110006400-110011200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr9:110006600-110010200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr9:110006600-110010400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr9:110006600-110013000	Enhancers	Placenta	Placenta
19	chr9:110006600-110013600	Weak transcription	NH-A	brain
20	chr9:110006800-110012200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:110007000-110022600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr9:110008600-110011200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:110008800-110011000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr9:110008800-110014200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr9:110008800-110014400	Weak transcription	Fetal Kidney	kidney
26	chr9:110009000-110010400	Weak transcription	Liver	Liver
27	chr9:110009000-110011400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr9:110009200-110010200	Weak transcription	HMEC	breast
29	chr9:110009200-110010200	Weak transcription	NHEK	skin
30	chr9:110009200-110010400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr9:110009200-110010400	Weak transcription	A549	lung
32	chr9:110009200-110011200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr9:110009200-110011200	Weak transcription	NHDF-Ad	bronchial
34	chr9:110009400-110011000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr9:110009800-110011000	Enhancers	HepG2	liver
36	chr9:110009800-110011200	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr9:110009800-110015400	Enhancers	Fetal Muscle Leg	muscle
38	chr9:110010000-110010600	Enhancers	Psoas Muscle	Psoas
39	chr9:110010000-110011000	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr9:110010000-110011400	Enhancers	H9 Cell Line	embryonic stem cell
41	chr9:110010000-110011800	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr9:110010000-110012400	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr9:110010000-110012400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr9:110010000-110012400	Enhancers	Pancreas	Pancrea
45	chr9:110010000-110014200	Enhancers	HSMMtube	muscle

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