Variant report

Variant	rs78752524
Chromosome Location	chr11:107731027-107731028
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr11:107729482-107731027	GM12878	blood:	n/a	n/a
2	ATF2	chr11:107730462-107731073	GM12878	blood:	n/a	n/a
3	BCLAF1	chr11:107730616-107731043	GM12878	blood:	n/a	chr11:107730810-107730819
4	BHLHE40	chr11:107729118-107731054	GM12878	blood:	n/a	chr11:107729324-107729340
5	NFIC	chr11:107730219-107731072	GM12878	blood:	n/a	n/a
6	FOXA1	chr11:107730705-107731219	HepG2	liver:	n/a	chr11:107730976-107730991
7	TBL1XR1	chr11:107730335-107731027	GM12878	blood:	n/a	n/a
8	RUNX3	chr11:107730235-107731033	GM12878	blood:	n/a	n/a
9	FOXA1	chr11:107730694-107731157	HepG2	liver:	n/a	chr11:107730976-107730991
10	NFIC	chr11:107730524-107731030	GM12878	blood:	n/a	n/a
11	STAT3	chr11:107730638-107731046	GM12878	blood:	n/a	n/a
12	MTA3	chr11:107730145-107731069	GM12878	blood:	n/a	n/a
13	POU2F2	chr11:107730373-107731107	GM12878	blood:	n/a	chr11:107730898-107730913
14	FOXA2	chr11:107730849-107731121	HepG2	liver:	n/a	n/a
15	POLR2A	chr11:107730255-107731119	GM12878	blood:	n/a	n/a
16	RCOR1	chr11:107730661-107731066	GM12878	blood:	n/a	n/a
17	MXI1	chr11:107730335-107731129	GM12878	blood:	n/a	n/a
18	FOXA1	chr11:107730815-107731112	HepG2	liver:	n/a	chr11:107730976-107730991
19	FOXA1	chr11:107730750-107731202	T-47D	breast:	n/a	chr11:107730976-107730991
20	RUNX3	chr11:107730277-107731051	GM12878	blood:	n/a	n/a
21	EBF1	chr11:107730327-107731030	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:107728941..107731899-chr11:107878493..107880123,2	K562	blood:
2	chr11:107459711..107461881-chr11:107729122..107732071,2	K562	blood:

Variant related genes	Relation type
SLC35F2	TF binding region
ENSG00000166266	Chromatin interaction
ENSG00000110675	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1039425	chr11:107468681-107895836	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv427899	chr11:107471544-107805894	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1049524	chr11:107540937-107954011	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1038581	chr11:107564274-107838386	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv898378	chr11:107580985-107847983	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv521771	chr11:107590335-107904646	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv1048938	chr11:107604473-107929950	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
9	nsv1045388	chr11:107686808-107733498	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	esv2750980	chr11:107720941-107970986	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
11	nsv1043139	chr11:107725297-107869216	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
12	nsv898381	chr11:107729106-107847983	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
13	esv3359030	chr11:107730845-107731105	Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107727800-107731200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:107728800-107731200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
3	chr11:107729400-107731200	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr11:107729600-107731600	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr11:107730600-107731200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:107730600-107731200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
7	chr11:107730800-107731200	Enhancers	Primary B cells from peripheral blood	blood
8	chr11:107730800-107731200	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr11:107730800-107731200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:107730800-107731200	Bivalent Enhancer	Placenta	Placenta
11	chr11:107730800-107731200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr11:107730800-107731600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:107730800-107733200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:107731000-107731200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:107731000-107731200	Enhancers	Fetal Brain Male	brain
16	chr11:107731000-107731200	Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr11:107731000-107731200	Flanking Active TSS	HepG2	liver
18	chr11:107731000-107731600	Enhancers	GM12878-XiMat	blood
19	chr11:107731000-107734200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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