Variant report

Variant	rs78768773
Chromosome Location	chr15:56510439-56510440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv569547	chr15:56504598-56572176	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv2760380	chr15:56510123-56529955	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56453600-56515000	Weak transcription	NHLF	lung
2	chr15:56459200-56511000	Weak transcription	Esophagus	oesophagus
3	chr15:56466000-56514200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr15:56467000-56511600	Weak transcription	Fetal Intestine Small	intestine
5	chr15:56480200-56515400	Weak transcription	Hela-S3	cervix
6	chr15:56485600-56521200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:56493200-56515400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:56496600-56515200	Weak transcription	Left Ventricle	heart
9	chr15:56498400-56514400	Weak transcription	NHEK	skin
10	chr15:56498400-56515200	Weak transcription	HUVEC	blood vessel
11	chr15:56500600-56513000	Weak transcription	HMEC	breast
12	chr15:56500600-56515200	Weak transcription	Ovary	ovary
13	chr15:56500800-56514400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:56500800-56515200	Weak transcription	Thymus	Thymus
15	chr15:56501600-56511800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr15:56502400-56514600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr15:56504200-56515200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr15:56504600-56511800	Weak transcription	Fetal Kidney	kidney
19	chr15:56504800-56510800	Weak transcription	HSMM	muscle
20	chr15:56504800-56511600	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr15:56504800-56511800	Weak transcription	K562	blood
22	chr15:56504800-56515200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr15:56505000-56515200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr15:56505600-56513600	Weak transcription	Brain Anterior Caudate	brain
25	chr15:56505600-56514400	Weak transcription	HepG2	liver
26	chr15:56505800-56511600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:56505800-56514800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr15:56506000-56514200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:56506200-56510600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr15:56506400-56510600	Weak transcription	Primary hematopoietic stem cells	blood
31	chr15:56506400-56511600	Weak transcription	Fetal Lung	lung
32	chr15:56506400-56514400	Weak transcription	Dnd41	blood
33	chr15:56508000-56534400	Weak transcription	Fetal Heart	heart
34	chr15:56508200-56511600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr15:56508200-56512800	Weak transcription	Primary T cells from cord blood	blood
36	chr15:56508200-56515400	Weak transcription	Fetal Thymus	thymus
37	chr15:56508200-56524000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr15:56508400-56510600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr15:56508400-56513000	Weak transcription	A549	lung
40	chr15:56508400-56514400	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr15:56508400-56515200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr15:56508400-56523000	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr15:56508800-56510800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr15:56508800-56511800	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr15:56508800-56514200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr15:56508800-56514600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr15:56508800-56515000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr15:56508800-56515200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr15:56509000-56514400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr15:56509000-56533600	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links