Variant report

Variant	rs787725
Chromosome Location	chr10:27235172-27235173
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr10:27234952-27235275	T-47D	breast:	n/a	n/a
2	GATA3	chr10:27234942-27235259	MCF-7	breast:	n/a	n/a
3	ZNF217	chr10:27234969-27235248	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27228167..27230462-chr10:27233630..27235621,2	MCF-7	breast:

Variant related genes	Relation type
LINC00614	TF binding region
LINC00202-1	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1197582	1.00[AMR][1000 genomes]
rs1830953	1.00[AFR][1000 genomes]
rs2488584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs703010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs787721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752390	chr10:27165095-27241780	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv894978	chr10:27185286-27239820	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2753825	chr10:27223642-27241780	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2754238	chr10:27223642-27241780	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv947784	chr10:27224620-27235850	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2750888	chr10:27225647-27241780	ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2760211	chr10:27225904-27235834	Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1047111	chr10:27225904-27242991	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1036722	chr10:27225904-27243972	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv1043456	chr10:27225904-27246821	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27220800-27235200	Weak transcription	Gastric	stomach
2	chr10:27228200-27235200	Weak transcription	Right Atrium	heart
3	chr10:27229200-27239000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:27234200-27235600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:27234400-27235600	Enhancers	Placenta Amnion	Placenta Amnion
6	chr10:27234400-27235800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:27234400-27236000	Flanking Active TSS	NHEK	skin
8	chr10:27234800-27235800	Enhancers	HMEC	breast
9	chr10:27235000-27235200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr10:27235000-27235200	Enhancers	Esophagus	oesophagus
11	chr10:27235000-27235200	Active TSS	Fetal Brain Female	brain
12	chr10:27235000-27235200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
13	chr10:27235000-27235600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:27235000-27235600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:27235000-27235600	Active TSS	Brain Anterior Caudate	brain
16	chr10:27235000-27235600	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr10:27235000-27235600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:27235000-27235600	Active TSS	Duodenum Mucosa	Duodenum
19	chr10:27235000-27235600	Enhancers	Pancreas	Pancrea
20	chr10:27235000-27235800	Enhancers	Placenta	Placenta

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