Variant report

Variant	rs787796
Chromosome Location	chr10:43312413-43312414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1592158	0.93[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes]
rs59856537	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs787795	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs787797	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs787799	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs788287	0.81[JPT][hapmap]
rs9422449	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
8	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	esv2757381	chr10:43104068-43352995	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	esv34929	chr10:43116194-43329770	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv895076	chr10:43234432-43326627	Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv1047838	chr10:43234590-43379219	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
13	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
14	nsv947891	chr10:43299039-43319274	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv14695	chr10:43301539-43355457	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
16	nsv948330	chr10:43311844-43319274	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43279800-43324000	Strong transcription	Liver	Liver
2	chr10:43279800-43328200	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr10:43293200-43332400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:43294600-43322800	Weak transcription	Stomach Mucosa	stomach
5	chr10:43298800-43313000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:43299600-43318600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:43299800-43313000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:43300000-43312800	Weak transcription	Fetal Brain Male	brain
9	chr10:43300000-43318000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:43301600-43323000	Weak transcription	HMEC	breast
11	chr10:43301800-43318000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:43301800-43325800	Weak transcription	NHLF	lung
13	chr10:43302600-43312800	Weak transcription	Fetal Kidney	kidney
14	chr10:43302800-43313000	Weak transcription	Brain Hippocampus Middle	brain
15	chr10:43303000-43317800	Weak transcription	NH-A	brain
16	chr10:43303200-43313000	Weak transcription	Brain Substantia Nigra	brain
17	chr10:43303200-43313200	Weak transcription	Right Ventricle	heart
18	chr10:43303200-43322200	Weak transcription	Psoas Muscle	Psoas
19	chr10:43303400-43313000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:43303400-43313000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr10:43303600-43325800	Weak transcription	Colon Smooth Muscle	Colon
22	chr10:43303600-43332200	Weak transcription	NHDF-Ad	bronchial
23	chr10:43303800-43314000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr10:43304600-43323000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:43305800-43313000	Weak transcription	Brain Anterior Caudate	brain
26	chr10:43306400-43320000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:43308200-43313000	Weak transcription	Aorta	Aorta
28	chr10:43308200-43314000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr10:43308200-43328200	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr10:43308400-43313000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:43308400-43313000	Weak transcription	Brain Angular Gyrus	brain
32	chr10:43308400-43313200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr10:43308400-43316200	Strong transcription	Dnd41	blood
34	chr10:43309800-43312800	Weak transcription	Primary hematopoietic stem cells	blood
35	chr10:43309800-43314600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr10:43309800-43316000	Weak transcription	HSMM	muscle
37	chr10:43309800-43316400	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr10:43309800-43319800	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr10:43309800-43330000	Weak transcription	Small Intestine	intestine
40	chr10:43310000-43312800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr10:43310200-43313000	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr10:43310200-43316800	Strong transcription	Fetal Intestine Large	intestine
43	chr10:43310200-43321800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr10:43310200-43324000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr10:43310400-43319400	Strong transcription	Fetal Stomach	stomach
46	chr10:43310400-43327400	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr10:43310600-43312800	Weak transcription	Brain Germinal Matrix	brain
48	chr10:43310600-43313000	Weak transcription	Thymus	Thymus
49	chr10:43310800-43312600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr10:43310800-43319200	Strong transcription	Fetal Intestine Small	intestine

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