Variant report

Variant	rs788052
Chromosome Location	chr10:29286447-29286448
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:29279625..29282236-chr10:29283754..29288089,3	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10826556	0.84[EUR][1000 genomes]
rs10826557	0.82[EUR][1000 genomes]
rs10826558	0.84[EUR][1000 genomes]
rs10826560	0.82[EUR][1000 genomes]
rs10826561	0.82[EUR][1000 genomes]
rs11007344	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11007349	0.84[EUR][1000 genomes]
rs11007388	0.84[EUR][1000 genomes]
rs11007389	0.84[EUR][1000 genomes]
rs11007391	0.84[EUR][1000 genomes]
rs11007392	0.84[EUR][1000 genomes]
rs11007393	0.84[EUR][1000 genomes]
rs11007394	0.84[EUR][1000 genomes]
rs12248033	0.82[EUR][1000 genomes]
rs2016129	0.82[EUR][1000 genomes]
rs60721675	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74128116	0.82[EUR][1000 genomes]
rs74128117	0.82[EUR][1000 genomes]
rs74128125	0.84[EUR][1000 genomes]
rs74128126	0.84[EUR][1000 genomes]
rs74128128	0.84[EUR][1000 genomes]
rs74128129	0.84[EUR][1000 genomes]
rs74128130	0.84[EUR][1000 genomes]
rs74128131	0.84[EUR][1000 genomes]
rs74128133	0.84[EUR][1000 genomes]
rs74128134	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv1046678	chr10:29242479-29378871	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv540524	chr10:29242479-29378871	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:29273800-29290800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:29282400-29291000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:29285000-29286800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:29285800-29286800	Enhancers	NH-A	brain
5	chr10:29286000-29287000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:29286000-29287200	Enhancers	HepG2	liver
7	chr10:29286000-29287600	Enhancers	A549	lung
8	chr10:29286000-29295400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:29286200-29286600	Enhancers	HSMMtube	muscle
10	chr10:29286200-29286800	Enhancers	Placenta Amnion	Placenta Amnion

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