Variant report

Variant	rs78826942
Chromosome Location	chr15:44395914-44395915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44374023..44375849-chr15:44395654..44398583,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	nsv1044435	chr15:44176103-44507403	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv1052511	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv542371	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv1045362	chr15:44280481-44414443	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv832989	chr15:44306469-44461710	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3351630	chr15:44334624-44547841	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv904173	chr15:44391572-44522214	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv904174	chr15:44391572-44538660	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44379400-44397400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:44381800-44400800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:44388600-44398000	Enhancers	Brain Substantia Nigra	brain
4	chr15:44391200-44396400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:44391400-44397000	Enhancers	NHDF-Ad	bronchial
6	chr15:44392400-44396200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:44392400-44396400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:44392600-44396400	Enhancers	Brain Anterior Caudate	brain
9	chr15:44392800-44396200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr15:44392800-44396200	Enhancers	Osteobl	bone
11	chr15:44392800-44396400	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr15:44393400-44396000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:44393400-44396000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr15:44393400-44396000	Enhancers	HSMM	muscle
15	chr15:44393400-44396000	Enhancers	HSMMtube	muscle
16	chr15:44393400-44396000	Enhancers	NHLF	lung
17	chr15:44393400-44396200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:44394200-44396000	Enhancers	Hela-S3	cervix
19	chr15:44394200-44396200	Enhancers	HUVEC	blood vessel
20	chr15:44394600-44396200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr15:44394800-44396000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:44394800-44396000	Enhancers	Brain Cingulate Gyrus	brain
23	chr15:44395000-44396000	Enhancers	Fetal Heart	heart
24	chr15:44395000-44398600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr15:44395000-44408000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr15:44395200-44396200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr15:44395200-44396200	Enhancers	Brain Angular Gyrus	brain
28	chr15:44395200-44397400	Enhancers	Brain Hippocampus Middle	brain
29	chr15:44395200-44398600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr15:44395200-44398800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr15:44395400-44396000	Enhancers	A549	lung
32	chr15:44395400-44396200	Enhancers	Muscle Satellite Cultured Cells	--
33	chr15:44395400-44396200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr15:44395400-44396400	Enhancers	NH-A	brain
35	chr15:44395400-44396800	Enhancers	HMEC	breast
36	chr15:44395400-44397000	Enhancers	NHEK	skin
37	chr15:44395400-44398600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr15:44395400-44398600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr15:44395600-44396200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:44395600-44396200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:44395800-44396400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr15:44395800-44399200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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