Variant report

Variant rs788321
Chromosome Location chr5:9544829-9544830
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:9542800-9547200 Active TSS Breast Myoepithelial Primary Cells Breast
2 chr5:9542800-9548400 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
3 chr5:9543000-9545000 Active TSS Brain Germinal Matrix brain
4 chr5:9543000-9545200 Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
5 chr5:9543000-9547200 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
6 chr5:9543000-9547200 Active TSS Brain Inferior Temporal Lobe brain
7 chr5:9543000-9547800 Active TSS Brain Hippocampus Middle brain
8 chr5:9543000-9548200 Active TSS Aorta Aorta
9 chr5:9543200-9545400 Active TSS Brain Anterior Caudate brain
10 chr5:9543200-9547200 Active TSS Brain Angular Gyrus brain
11 chr5:9543200-9547400 Active TSS Right Ventricle heart
12 chr5:9543200-9548200 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
13 chr5:9543200-9548200 Active TSS Pancreatic Islets Pancreatic Islet
14 chr5:9543200-9548200 Active TSS Right Atrium heart
15 chr5:9543400-9548000 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
16 chr5:9543400-9548400 Active TSS NHLF lung
17 chr5:9543600-9547200 Active TSS Fetal Intestine Large intestine
18 chr5:9543600-9548400 Active TSS Rectal Mucosa Donor 29 rectum
19 chr5:9543800-9547800 Active TSS Fetal Lung lung
20 chr5:9543800-9548000 Active TSS Fetal Heart heart
21 chr5:9543800-9548200 Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
22 chr5:9543800-9548200 Active TSS Fetal Kidney kidney
23 chr5:9543800-9548600 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr5:9543800-9548800 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
25 chr5:9543800-9548800 Active TSS Placenta Amnion Placenta Amnion
26 chr5:9544000-9545200 Active TSS Cortex derived primary cultured neurospheres brain
27 chr5:9544000-9546000 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
28 chr5:9544000-9546800 Active TSS iPS-20b Cell Line embryonic stem cell
29 chr5:9544200-9545000 Bivalent/Poised TSS Duodenum Smooth Muscle Duodenum
30 chr5:9544200-9547000 Active TSS ES-WA7 Cell Line embryonic stem cell
31 chr5:9544200-9547000 Bivalent/Poised TSS Fetal Thymus thymus
32 chr5:9544200-9547600 Active TSS Rectal Mucosa Donor 31 rectum
33 chr5:9544200-9548000 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr5:9544200-9548000 Active TSS Ovary ovary
35 chr5:9544200-9548400 Active TSS NHDF-Ad bronchial
36 chr5:9544400-9545000 Active TSS H1 Cell Line embryonic stem cell
37 chr5:9544400-9545000 Active TSS Colon Smooth Muscle Colon
38 chr5:9544400-9545200 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr5:9544400-9545200 Active TSS Esophagus oesophagus
40 chr5:9544400-9545200 Bivalent/Poised TSS Thymus Thymus
41 chr5:9544400-9545400 Active TSS H1 Derived Mesenchymal Stem Cells ES cell derived
42 chr5:9544400-9545600 Bivalent/Poised TSS Small Intestine intestine
43 chr5:9544400-9545600 Bivalent/Poised TSS HSMMtube muscle
44 chr5:9544400-9546000 Flanking Active TSS NHEK skin
45 chr5:9544400-9546200 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr5:9544400-9546200 Flanking Active TSS Liver Liver
47 chr5:9544400-9546200 Flanking Active TSS Stomach Smooth Muscle stomach
48 chr5:9544400-9546600 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr5:9544400-9547200 Active TSS H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr5:9544400-9547200 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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