Variant report
| Variant | rs7884422 |
|---|---|
| Chromosome Location | chrX:104412535-104412536 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chrX:104331567..104334480-chrX:104412138..104414483,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:5)
| rs_ID | r2[population] |
|---|---|
| rs2009995 | 0.86[YRI][hapmap] |
| rs2392685 | 0.86[YRI][hapmap] |
| rs5916724 | 0.86[YRI][hapmap] |
| rs5962469 | 0.90[YRI][hapmap] |
| rs6621931 | 0.86[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758580 | chrX:104303006-104415037 | Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | esv2758881 | chrX:104303006-104415037 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv432352 | chrX:104346855-104831855 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
