Variant report

Variant	rs78885198
Chromosome Location	chr5:112374148-112374149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:112372620..112374480-chr5:112377239..112378903,2	K562	blood:
2	chr5:112368998..112372284-chr5:112372465..112374362,3	K562	blood:
3	chr5:112373432..112375747-chr5:112376830..112379641,2	K562	blood:
4	chr5:112372883..112375761-chr5:112416823..112419304,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599394	chr5:112185491-112446323	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv882717	chr5:112336588-112408944	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv15902	chr5:112369563-112410775	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv599395	chr5:112370311-112428869	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv1817377	chr5:112373682-112389837	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112360000-112379000	Weak transcription	Small Intestine	intestine
2	chr5:112362800-112385800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr5:112363600-112379000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr5:112363600-112379000	Weak transcription	Brain Substantia Nigra	brain
5	chr5:112363600-112379200	Weak transcription	Gastric	stomach
6	chr5:112363600-112379200	Weak transcription	Spleen	Spleen
7	chr5:112363600-112382800	Weak transcription	Fetal Intestine Small	intestine
8	chr5:112363800-112376200	Weak transcription	Dnd41	blood
9	chr5:112363800-112384600	Weak transcription	Aorta	Aorta
10	chr5:112363800-112386200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr5:112363800-112399000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr5:112363800-112409200	Weak transcription	Colonic Mucosa	Colon
13	chr5:112363800-112417800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr5:112364000-112374200	Weak transcription	HUVEC	blood vessel
15	chr5:112364000-112374600	Weak transcription	Lung	lung
16	chr5:112364000-112379000	Weak transcription	Fetal Lung	lung
17	chr5:112364000-112389400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr5:112364200-112386600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr5:112364600-112379000	Weak transcription	Brain Hippocampus Middle	brain
20	chr5:112364800-112378800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr5:112364800-112382800	Weak transcription	Fetal Intestine Large	intestine
22	chr5:112364800-112382800	Weak transcription	Fetal Thymus	thymus
23	chr5:112365600-112376400	Weak transcription	Primary T cells from cord blood	blood
24	chr5:112365800-112376800	Weak transcription	Thymus	Thymus
25	chr5:112365800-112382200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:112366600-112379200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr5:112367600-112378200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr5:112368800-112379400	Strong transcription	Fetal Stomach	stomach
29	chr5:112368800-112382800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr5:112369000-112379000	Weak transcription	Psoas Muscle	Psoas
31	chr5:112369200-112378800	Weak transcription	Fetal Heart	heart
32	chr5:112369200-112380200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr5:112369400-112377400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr5:112369400-112382800	Strong transcription	Liver	Liver
35	chr5:112369800-112378000	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr5:112370200-112379200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr5:112370200-112406600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr5:112370600-112382800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr5:112370600-112396600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr5:112371000-112374400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr5:112371000-112383400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr5:112371200-112374400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr5:112371200-112374400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr5:112371200-112378600	Weak transcription	Right Atrium	heart
45	chr5:112371400-112374200	Weak transcription	NH-A	brain
46	chr5:112371400-112374400	Strong transcription	Fetal Muscle Leg	muscle
47	chr5:112371400-112379000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr5:112371400-112382600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr5:112371400-112391400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr5:112371400-112423800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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