Variant report

Variant	rs78903440
Chromosome Location	chr3:119361513-119361514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr3:119361120-119361556	K562	blood:	n/a	n/a

Variant related genes	Relation type
POPDC2	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829695	chr3:119178890-119367996	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv1831824	chr3:119263607-119402474	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv1014394	chr3:119360506-119412275	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119341400-119364600	Weak transcription	Liver	Liver
2	chr3:119349800-119378800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:119352000-119378600	Weak transcription	Thymus	Thymus
4	chr3:119352600-119367000	Weak transcription	Ovary	ovary
5	chr3:119354000-119387600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr3:119356200-119389000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:119356800-119364800	Weak transcription	Stomach Mucosa	stomach
8	chr3:119356800-119390000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:119356800-119391800	Weak transcription	Brain Substantia Nigra	brain
10	chr3:119356800-119391800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr3:119357200-119361800	Weak transcription	A549	lung
12	chr3:119357200-119383800	Weak transcription	Primary B cells from cord blood	blood
13	chr3:119357800-119361800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:119357800-119366600	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr3:119357800-119367000	Weak transcription	Fetal Intestine Large	intestine
16	chr3:119357800-119386400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr3:119358000-119361800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:119358000-119361800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:119358000-119361800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:119358000-119361800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:119358000-119361800	Weak transcription	NH-A	brain
22	chr3:119358000-119362000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:119358000-119362000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:119358000-119371200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr3:119358000-119390600	Weak transcription	Brain Anterior Caudate	brain
26	chr3:119358000-119391800	Weak transcription	Colonic Mucosa	Colon
27	chr3:119358200-119361600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr3:119358200-119362000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:119358200-119362800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr3:119358200-119366200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr3:119358200-119372600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:119358400-119361600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr3:119358400-119361800	Weak transcription	NHEK	skin
34	chr3:119358400-119362200	Weak transcription	HUVEC	blood vessel
35	chr3:119358400-119366800	Weak transcription	Esophagus	oesophagus
36	chr3:119358400-119367000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr3:119358400-119376600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr3:119358600-119361800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr3:119358600-119361800	Weak transcription	HMEC	breast
40	chr3:119358600-119365200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr3:119358600-119366600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr3:119358600-119371600	Weak transcription	Duodenum Mucosa	Duodenum
43	chr3:119358600-119372400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr3:119358600-119376800	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr3:119358800-119361800	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr3:119358800-119362600	Genic enhancers	Fetal Heart	heart
47	chr3:119359600-119362000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr3:119359800-119363600	Strong transcription	Stomach Smooth Muscle	stomach
49	chr3:119360000-119361800	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr3:119360000-119362200	Strong transcription	Adipose Nuclei	Adipose

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